Francesca Demichelis

发表

Defining order and timing of mutations during cancer progression: the TO-DAG probabilistic graphical model

Paola Lecca, Nicola Casiraghi, Francesca Demichelis, 2015, Front. Genet..

A hierarchical Naïve Bayes Model for handling sample heterogeneity in classification problems: an application to tissue microarrays

Riccardo Bellazzi, Paolo Magni, Mark A. Rubin, 2006, BMC Bioinformatics.

Tele-dermatology service based on an Integrated Electronic Patient Record (IEPR): preliminary results

Claudio Eccher, Francesca Demichelis, P. Bauer, 2001 .

Voices of biotech

Jun Qin, Bonnie Berger, Drew Endy, 2016, Nature Biotechnology.

Combining Supervised and Unsupervised Methods to Support Early Diagnosis of Hepatocellular Carcinoma

Alberto Quaglia, Federica Ciocchetta, Francesca Demichelis, 2003, AIME.

Internet-based profiler system as integrative framework to support translational research

Alberto Riva, Ronglai Shen, Robert Kim, 2005, BMC Bioinformatics.

Simple methods for peak and valley detection in time series microarray data

Enrico Blanzieri, Alessandro Romanel, Francesca Demichelis, 2007 .

An automated procedure to properly handle digital images in large scale Tissue Microarray experiments

Mattia Barbareschi, Francesca Demichelis, Andrea Sboner, 2005, Comput. Methods Programs Biomed..

Hierarchical Naive Bayes for genetic association studies

Riccardo Bellazzi, Nicola Barbarini, Alberto Malovini, 2012, BMC Bioinformatics.

ABEMUS: platform-specific and data-informed detection of somatic SNVs in cfDNA

Alessandro Romanel, Olivier Elemento, Nicola Casiraghi, 2020, Bioinform..

Improving plastic management by means of people awareness

Francesca Demichelis, Edoardo Degli Innocenti, Riccardo Caivano, 2019 .

Active Sampling for Knowledge Discovery from Biomedical Data

Paolo Avesani, Emanuele Olivetti, Sriharsha Veeramachaneni, 2005, PKDD.

TMABoost: an integrated system for comprehensive management of tissue microarray data

Mattia Barbareschi, Francesca Demichelis, Andrea Sboner, 2006, IEEE Transactions on Information Technology in Biomedicine.

User attitudes in analyzing digital slides in a quality control test bed: A preliminary study

Vincenzo Della Mea, Francesca Demichelis, Carlo Alberto Beltrami, 2006, Comput. Methods Programs Biomed..

Tumor purity quantification by clonal DNA methylation signatures

Matteo Benelli, Francesca Demichelis, Dario Romagnoli, 2018, Bioinform..

TPES: tumor purity estimation from SNVs

Davide Prandi, Francesca Demichelis, Tarcisio Fedrizzi, 2019, Bioinform..

EthSEQ: ethnicity annotation from whole exome sequencing data

Tuo Zhang, Alessandro Romanel, Olivier Elemento, 2016, bioRxiv.

On information organization and information extraction for the study of gene expressions by tissue microarray technique

Francesca Demichelis, F. Demichelis, 2005 .

Digital Pathology: Science Fiction?

Stefano Forti, Mattia Barbareschi, Francesca Demichelis, 2000, International journal of surgical pathology.

Digital Storage of Glass Slides for Quality Assurance in Histopathology and Cytopathology

Stefano Forti, Vincenzo Della Mea, Francesca Demichelis, 2002, Journal of telemedicine and telecare.

EML4-ALK fusion lung cancer: a rare acquired event.

Francesca Demichelis, Holger Moch, Alex Soltermann, 2008, Neoplasia.

Automated immunofluorescence analysis defines microvessel area as a prognostic parameter in clear cell renal cell cancer.

Francesca Demichelis, Holger Moch, Peter Schraml, 2007, Human pathology.

Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing.

Francesca Demichelis, Mark B Gerstein, Lukas Habegger, 2011, Genome research.

Patient derived organoids to model rare prostate cancer phenotypes

Dong Gao, Matteo Benelli, Davide Prandi, 2018, Nature Communications.

Integrative Clinical Genomics of Advanced Prostate Cancer

Lawrence D. True, Johann S. de Bono, Colin C. Pritchard, 2015, Cell.

A highly specific SpCas9 variant is identified by in vivo screening in yeast

Alessandro Romanel, Davide Prandi, Alberto Inga, 2018, Nature Biotechnology.

Epigenetic repression of miR-31 disrupts androgen receptor homeostasis and contributes to prostate cancer progression.

Francesca Demichelis, Eugenia G. Giannopoulou, Olivier Elemento, 2013, Cancer research.

The genomic complexity of primary human prostate cancer

Eric S. Lander, Kristian Cibulskis, Todd R. Golub, 2010, Nature.

Association of cytokeratin 7 and 19 expression with genomic stability and favorable prognosis in clear cell renal cell cancer

Mark Gerstein, Francesca Demichelis, Holger Moch, 2008, International journal of cancer.

A Computational Framework Discovers New Copy Number Variants with Functional Importance

Francesca Demichelis, Derek Oldridge, Maria Poptsova, 2011, PloS one.

Divergent clonal evolution of castration resistant neuroendocrine prostate cancer

Matteo Benelli, Clarisse Marotz, Davide Prandi, 2016, Nature Medicine.

SPOP mutation leads to genomic instability in prostate cancer

Paola Lecca, Clarisse Marotz, Davide Prandi, 2015, eLife.

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma

Francesca Demichelis, Nallasivam Palanisamy, Javed Siddiqui, 2010, Nature Medicine.

Development and validation of a whole-exome sequencing test for simultaneous detection of point mutations, indels and copy-number alterations for precision cancer care

Alessandro Romanel, Francesca Demichelis, Tuo Zhang, 2016, npj Genomic Medicine.

Simple Methods for Peak Detection in Time Series Microarray Data.

Enrico Blanzieri, Francesca Demichelis, Andrea Sboner, 2004 .

Optimizing copy number variation analysis using genome-wide short sequence oligonucleotide arrays

Francesca Demichelis, Andrea Sboner, Samprit Banerjee, 2010, Nucleic acids research.

Unraveling the clonal hierarchy of somatic genomic aberrations

Alessandro Romanel, Davide Prandi, Levi A Garraway, 2014, Genome Biology.

Defining aggressive prostate cancer using a 12-gene model.

Alberto Riva, Francesca Demichelis, Arul M Chinnaiyan, 2006, Neoplasia.

PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer.

Francesca Demichelis, Wei Chen, Arul M Chinnaiyan, 2014, Cancer research.

Clonal evolution of chemotherapy-resistant urothelial carcinoma

Davide Prandi, Francesca Demichelis, Olivier Elemento, 2016, Nature Genetics.

ASEQ: fast allele-specific studies from next-generation sequencing data

Alessandro Romanel, Davide Prandi, Francesca Demichelis, 2015, BMC Medical Genomics.

Whole-Exome Sequencing of Metastatic Cancer and Biomarkers of Treatment Response.

Vladimir Vacic, Fabien Campagne, Hui Xue, 2015, JAMA oncology.

Personalized In Vitro and In Vivo Cancer Models to Guide Precision Medicine.

Davide Prandi, Francesca Demichelis, Olivier Elemento, 2017, Cancer discovery.

SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines

Levi Garraway, Rameen Beroukhim, Mark A. Rubin, 2008, Nucleic acids research.