Caitlin M. A. Simopoulos

发表

pepFunk, a tool for peptide-centric functional analysis in metaproteomic human gut microbiome studies

Caitlin M. A. Simopoulos, Zhibin Ning, Xu Zhang, 2019, bioRxiv.

Metabolic and co-expression network-based analyses associated with nitrate response in rice

Caitlin M. A. Simopoulos, P. McNicholas, T. Zhu, 2014, BMC Genomics.

Prediction of plant lncRNA by ensemble machine learning classifiers

Caitlin M. A. Simopoulos, G. B. Golding, E. Weretilnyk, 2018, BMC Genomics.

iMetaLab Suite: A one‐stop toolset for metaproteomics

Caitlin M. A. Simopoulos, D. Figeys, K. Cheng, 2022, iMeta.

CRISPR: A New Way for Scientists to Edit DNA

Caitlin M. A. Simopoulos, Carla Bautista, Anna Drangowska-Way, 2021, Frontiers for Young Minds.

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

Caitlin M. A. Simopoulos, D. Figeys, Zhibin Ning, 2022, mSystems.

Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress

Caitlin M. A. Simopoulos, G. B. Golding, M. MacLeod, 2020, BMC Genomics.

Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships

Caitlin M. A. Simopoulos, G. B. Golding, E. Weretilnyk, 2019, G3: Genes, Genomes, Genetics.

pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies.

Xu Zhang, Caitlin M. A. Simopoulos, Zhibin Ning, 2020, Bioinformatics.

MetaProClust-MS1: A tool for clustering metaproteomes using rapid MS1 profiling

Caitlin M. A. Simopoulos, D. Figeys, Zhibin Ning, 2021, bioRxiv.

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Caitlin M. A. Simopoulos, D. Figeys, Yang‐Yu Liu, 2021, bioRxiv.

Prediction of plant lncRNA by ensemble machine learning classifiers

Caitlin M. A. Simopoulos, G. B. Golding, E. Weretilnyk, 2018, BMC Genomics.