S. Yoneda

发表

Three-dimensional model of the human PAF receptor.

T. Shimizu, H. Umeyama, A. Kajihara, 1994, Journal of lipid mediators and cell signalling.

Motion of an antiviral compound in a rhinovirus capsid under rotational symmetry boundary conditions.

Y. Kurihara, H. Umeyama, T. Yoneda, 2002, Journal of molecular graphics & modelling.

Potential of mean force and umbrella sampling simulation for the transport of 5‐oxazolidinone in heterotetrameric sarcosine oxidase

Go Watanabe, Go Watanabe, Takami Saito, 2020, Proteins.

Analysis of water channels by molecular dynamics simulation of heterotetrameric sarcosine oxidase

Haruo Suzuki, A. Hiroshima, Go Watanabe, 2015, Biophysics and physicobiology.

Molecular dynamics study on the hydrogen bond formation between α-hydrogen atom of L-Phe and N5 atom of FAD in the enzyme-substrate complex of the L-Phe oxidase reaction.

Haruo Suzuki, S. Yoneda, Masanori Ootaki, 2022, Biochemical and biophysical research communications.

Comprehensive Understanding of Host- and Guest-Dependent Helix Inversion in Chiral Nematic Liquid Crystals: Experimental and Molecular Dynamics Simulation Study.

Go Watanabe, Hisako Sato, J. Yoshida, 2018, The journal of physical chemistry. B.

Visualizing the helical stacking of octahedral metallomesogens with a chiral core.

Kota Suzuki, Mitsuo Hara, Go Watanabe, 2020, Chemical communications.

Molecular Dynamics Simulations to Determine the Structure and Dynamics of Hepatitis B Virus Capsid Bound to a Novel Anti-viral Drug.

M. Iwadate, H. Umeyama, Y. Murakami, 2016, Chemical & pharmaceutical bulletin.

Roles of the aromatic residues conserved in the active center of Saccharomycopsis alpha-amylase for transglycosylation and hydrolysis activity.

K. Ishikawa, I. Matsui, S. Fukui, 1994, Biochemistry.

Parallel Evolution of Two dmrt1-Derived Genes, dmy and dm-W, for Vertebrate Sex Determination

Shuuji Mawaribuchi, Michihiko Ito, N. Takamatsu, 2019, iScience.

Molecular-dynamics simulations of [Met5]- and [D-Ala2,Met5]-enkephalins. Biological implication of monomeric folded and dimeric unfolded conformations.

T. Ishida, K. Kitamura, M. Inoue, 1988, The Biochemical journal.

Dynamic characteristics of a peptide-binding groove of human HLA-A2 class I MHC molecules: normal mode analysis of the antigen peptide-class I MHC complex.

Mayuko Takeda-Shitaka, H. Umeyama, K. Kamiya, 2002, Chemical & pharmaceutical bulletin.

A further implementation of the rotational symmetry boundary conditions for calculations of P4(3)2(1)2 symmetry crystals.

S. Yoneda, 1997, Journal of molecular graphics & modelling.

Structure and dynamics of the GH loop of the foot-and-mouth disease virus capsid.

S. Yoneda, H. Azuma, 2009, Journal of molecular graphics & modelling.

Importance of folded monomer and extended antiparallel dimer structures as enkephalin active conformation Molecular dynamics simulations of [Met5]enkephalin in water

T. Ishida, K. Kitamura, M. Inoue, 1988, FEBS letters.

Adaptability of restrained molecular dynamics for tertiary structure prediction: application to Crotalus atrox venom phospholipase A2.

T. Amisaki, T. Ishida, K. Ikeda, 1991, Protein engineering.

Induced fitting between a complex of four nucleotides and the cognate amino acid.

N. Go, S. Fujii, M. Shimizu, 1985, Biophysical chemistry.

A homology modeling method of an icosahedral viral capsid: inclusion of surrounding protein structures.

H. Umeyama, T. Yoneda, S. Yoneda, 1999, Journal of molecular graphics & modelling.