K. Thys

发表

Acquired Resistance of Mycobacterium tuberculosis to Bedaquiline

B. D. de Jong, K. Andries, N. Lounis, 2014, PloS one.

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications.

J. Aerssens, P. Verhasselt, I. Vandenbroucke, 2011, BioTechniques.

JC Virus Quasispecies Analysis Reveals a Complex Viral Population Underlying Progressive Multifocal Leukoencephalopathy and Supports Viral Dissemination via the Hematogenous Route

E. Major, C. Ryschkewitsch, L. Stuyver, 2014, Journal of Virology.

JC virus quasispecies analysis reveals complex viral population underlying PML and

C. Ryschkewitsch, L. Stuyver, M. Monaco, 2014 .

A Method Enabling High-Throughput Sequencing of Human Cytomegalovirus Complete Genomes from Clinical Isolates

P. Maes, M. Van Ranst, J. Aerssens, 2014, PloS one.

Quasispecies Analysis of JC Virus DNA Present in Urine of Healthy Subjects

L. Stuyver, T. Van Loy, L. Tritsmans, 2013, PloS one.

Deep sequencing analysis of HIV‐1 reverse transcriptase at baseline and time of failure in patients receiving rilpivirine in the phase III studies ECHO and THRIVE

J. Aerssens, V. van Eygen, J. Vingerhoets, 2016, Journal of medical virology.

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles

Jeroen Aerssens, Koen Van der Borght, Herman van Vlijmen, 2015, BMC Bioinformatics.

Adenoviral vectors expressing siRNAs for discovery and validation of gene function.

F. Michiels, M. Lambrecht, G. Arts, 2003, Genome research.

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering

Luc Bijnens, Jeroen Aerssens, Willem Talloen, 2015, BMC Bioinformatics.

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering

Jeroen Aerssens, Willem Talloen, Koen Van der Borght, 2015, Bioinform..

High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination

Guangdi Li, P. Maes, M. Van Ranst, 2015, Journal of Virology.

Performance assessment of the Illumina massively parallel sequencing platform for deep sequencing analysis of viral minority variants.

Bie M. P. Verbist, J. Aerssens, J. Reumers, 2015, Journal of virological methods.

Sensitive testing of plasma HIV-1 RNA and Sanger sequencing of cellular HIV-1 DNA for the detection of drug resistance prior to starting first-line antiretroviral therapy with etravirine or efavirenz.

A. Geretti, J. Vingerhoets, A. Hill, 2014, The Journal of antimicrobial chemotherapy.

Pre-existence and Persistence of Resistant Minority Hepatitis C Virus Variants in Genotype 1-Infected Patients Treated With Simeprevir/Peginterferon/Ribavirin

J. Aerssens, V. van Eygen, O. Lenz, 2016, Open forum infectious diseases.

Ultra-deep sequencing of HIV-1 reverse transcriptase before start of an NNRTI-based regimen in treatment-naive patients.

L. Stuyver, J. Aerssens, I. Vandenbroucke, 2012, Virology.

Virology analysis in HCV genotype 1-infected patients treated with the combination of simeprevir and TMC647055/ritonavir, with and without ribavirin, and JNJ-56914845

P. van Remoortere, R. Verloes, L. Vijgen, 2017, Virology Journal.

IgG variable region and VH CDR3 diversity in unimmunized mice analyzed by massively parallel sequencing.

T. Panavas, J. Aerssens, R. Sweet, 2014, Molecular immunology.

HCMV Displays a Unique Transcriptome of Immunomodulatory Genes in Primary Monocyte-Derived Cell Types

J. Aerssens, M. Van Loock, Ellen Van Damme, 2016, PloS one.

Efficiency of whole genome amplification of single circulating tumor cells enriched by CellSearch and sorted by FACS

J. Aerssens, J. Reumers, L. Terstappen, 2013, Genome Medicine.

HIV-1 V3 envelope deep sequencing for clinical plasma specimens failing in phenotypic tropism assays

L. Stuyver, I. Vandenbroucke, M. Moutschen, 2010, AIDS research and therapy.

A pan-serotype dengue virus inhibitor targeting the NS3–NS4B interaction

Peggy Geluykens, R. Bartenschlager, A. Marchand, 2021, Nature.

Blocking NS3–NS4B interaction inhibits dengue virus in non-human primates

Gregory D. Gromowski, A. Barrett, D. Beasley, 2023, Nature.

Assessment of Etravirine Resistance in HIV-1-Infected Paediatric Patients using Population and Deep Sequencing: Final Results of the PIANO Study

J. Vingerhoets, S. Meyer, F. Tomaka, 2015, Antiviral therapy.

Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE study.

Jeroen Aerssens, Gaston Picchio, Inge Dierynck, 2014, The Journal of infectious diseases.

Homeobox gene expression profile in human hematopoietic multipotent stem cells and T-cell progenitors: implications for human T-cell development

F. Weerkamp, F. Staal, G. Leclercq, 2003, Leukemia.

HIV-1 nucleotide mixture detection in the virco(®)TYPE HIV-1 genotyping assay: a comparison between Sanger sequencing and 454 pyrosequencing.

J. Aerssens, P. Verhasselt, I. Vandenbroucke, 2011, Journal of virological methods.

JC Virus Quasispecies Analysis Reveals a Complex Viral Population Underlying Progressive Multifocal Leukoencephalopathy and Supports Viral Dissemination via the Hematogenous Route

E. Major, C. Ryschkewitsch, L. Stuyver, 2014, Journal of Virology.

Tara L. Kieffer, J. Aerssens, J. Sullivan, 2014, The Journal of infectious diseases.