Pavel Matula

发表

High-resolution cytometry network project: client/server system for 3D optical microscope data storage and analysis

Pavel Matula, Michal Kozubek, Petr Mejzlík, 2004 .

Automated confocal live cell microscopy based on spinning disks

Pavel Matula, Michal Kozubek, Petr Matula, 2006 .

TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images

Pavel Matula, Aleš Hampl, Anna Kotrbová, 2019, Journal of extracellular vesicles.

Smooth Chan-Vese segmentation via graph cuts

Pavel Matula, Michal Kozubek, Martin Maska, 2012, Pattern Recognit. Lett..

Performance and sensitivity evaluation of 3D spot detection methods in confocal microscopy

Karl Rohr, Pavel Matula, Michal Kozubek, 2015, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Estimating large local motion in live-cell imaging using variational optical flow - towards motion tracking in live cell imaging using optical flow

Pavel Matula, Jan Hubený, Vladimír Ulman, 2007, VISAPP.

Acquiarium: Free software for the acquisition and analysis of 3D images of cells in fluorescence microscopy

Pavel Matula, Petr Matula, Martin Maška, 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model

Carlos Ortiz-de-Solorzano, Pavel Matula, Michal Kozubek, 2009, SCIA.

Fast Marching 3D Reconstruction of Interphase Chromosomes

Pavel Matula, Michal Kozubek, Jan Hubený, 2004, ECCV Workshops CVAMIA and MMBIA.

Non-rigid contour-based temporal registration of 2D cell nuclei images using the Navier equation

Karl Rohr, Pavel Matula, Dmitry V. Sorokin, 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI).

Graph-Cut Library for Biomedical Image Analysis

Pavel Matula, 2012 .

Acquiarium version 1.6

Pavel Matula, Marek Vinkler, Ondřej Daněk, 2008 .

Non-Rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model

Karl Rohr, Pavel Matula, Igor Peterlik, 2018, IEEE Transactions on Medical Imaging.

Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

Arrate Muñoz-Barrutia, Pavel Matula, Anna Kotrbová, 2019, Scientific Reports.

Spherical Object Reconstruction Using Star-Shaped Simplex Meshes

Pavel Matula, David Svoboda, 2001, EMMCVPR.

A benchmark for comparison of cell tracking algorithms

Nathalie Harder, Karl Rohr, Guy M. Hagen, 2014, Bioinform..

A Fast Level Set-Like Algorithm with Topology Preserving Constraint

Pavel Matula, Martin Maska, M. Maška, 2009, CAIP.

A Fast Level Set-Like Algorithm for Region-Based Active Contours

Pavel Matula, Michal Kozubek, Martin Maska, 2010, ISVC.

Effectivity of spherical object reconstruction using star-shaped simplex meshes

Pavel Matula, 2002, Proceedings. First International Symposium on 3D Data Processing Visualization and Transmission.

High-resolution cytometry network project: client/server system for 3D optical microscope data storage and analysis

Pavel Matula, Michal Kozubek, Petr Mejzlík, 2004, Proceedings. 2nd International Symposium on 3D Data Processing, Visualization and Transmission, 2004. 3DPVT 2004..

Fast and Robust Segmentation of Low Contrast Biomedical Images

Pavel Matula, Jan Hubený, 2006 .

On Euclidean Metric Approximation via Graph Cuts

Pavel Matula, Ondrej Danek, P. Matula, 2010, VISIGRAPP.

Automated image analysis in fluorescence microscopy: Fromisolated cells to tissues and microarray images

Pavel Matula, Michal Kozubek, David Svoboda, 2004 .

A network solution for high-resolution image cytometry

Pavel Matula, Michal Kozubek, Petr Mejzlík, 2003 .

Automated confocal microscopy: the way of achieving both quality and quantity in 3D image cytometry

Pavel Matula, Michal Kozubek, Petr Matula, 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

High-resolution cytometry network project:towards remote and distributed acquisition, processing and visualisation of 3D image data inhuman genome research

Pavel Matula, Michal Kozubek, Petr Mejzlík, 2002, Proceedings. First International Symposium on 3D Data Processing Visualization and Transmission.

Analysis of biomedical image data acquired using opticalmicroscopy

Pavel Matula, Michal Kozubek, David Svoboda, 2005 .

Acquiarium: Free Software For Image Acquisition And 3D AnalysisOf Fluorescently Labeled Cells

Pavel Matula, Michal Kozubek, Martin Maška, 2009 .

Spherical Object Reconstruction Using Simplex Meshes from Sparse Data

Pavel Matula, David Svoboda, 2003, DGCI.

Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm

Pavel Matula, Michal Kozubek, Martin Maska, 2010, MEMICS.

Acquiarium 1.0

Pavel Matula, Michal Kozubek, Petr Matula, 2007 .

Applications of Image Registration in Human Genome Research

Pavel Matula, Michal Kozubek, Petr Matula, 2004, ECCV Workshops CVAMIA and MMBIA.

Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy

Pavel Matula, Michal Kozubek, Petr Matula, 2004, Microscopy research and technique.

Tissue Reconstruction Based on Deformation of Dual Simplex Meshes

Pavel Matula, David Svoboda, 2003, DGCI.

Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy

Pavel Matula, Martin Maska, Anna Kotrbová, 2016, ECCV Workshops.

Acquiarium: Free image acquisition and analysis software forimage cytometry

Pavel Matula, Michal Kozubek, Marek Vinkler, 2009 .

3D Object reconstructions in image cytometry

Pavel Matula, David Svoboda, 2003 .

Graph Cuts and Approximation of the Euclidean Metric on Anisotropic Grids

Pavel Matula, Ondrej Danek, P. Matula, 2010, VISAPP.

An Objective Comparison of Cell Tracking Algorithms

Nathalie Harder, Karl Rohr, Lars Malmström, 2017, Nature Methods.

Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests

Pavel Matula, Martin Maska, 2017, 2017 IEEE International Conference on Computer Vision Workshops (ICCVW).

Algorithms and data representation in the FISH 3.0 imageprocessing system

Pavel Matula, Petr Mejzlík, Petr Matula, 2002 .

3D Reconstruction of Interphase Chromosomes

Pavel Matula, Michal Kozubek, Petr Matula, 2005 .

An Improved Riemannian Metric Approximation for Graph Cuts

Pavel Matula, Ondrej Danek, P. Matula, 2011, DGCI.

Acquiarium: Free Software For Image Acquisition And ImageAnalysis In Cytometry

Pavel Matula, Michal Kozubek, Martin Maška, 2010 .

FISH 3.0 client-server system for 3D optical microscope datastorage and analysis

Pavel Matula, Petr Mejzlík, Petr Matula, 2002 .

A simple Fourier filter for suppression of the missing wedge ray artefacts in single-axis electron tomographic reconstructions

Pavel Matula, Ivan Raška, I. Raška, 2014, Journal of structural biology.

Estimating Large Local Motion in Live-Cell Imaging UsingVariational Optical Flow

Pavel Matula, Jan Hubený, Vladimír Ulman, 2007 .

Combined confocal and wide-field high-resolution cytometry ofFISH-stained cells

Pavel Matula, Michal Kozubek, Petr Matula, 2001 .