Gang Xu

发表

OPUS-Mut: Studying the Effect of Protein Mutation through Side-Chain Modeling

Jianpeng Ma, Qinghua Wang, Gang Xu, 2022, bioRxiv.

OPUS-CSF: A C-atom-based Scoring Function for Ranking Protein Structural Models

Jianpeng Ma, Qinghua Wang, Tianwu Zang, 2017, bioRxiv.

OPUS‐SSF: A side‐chain‐inclusive scoring function for ranking protein structural models

Jianpeng Ma, Qinghua Wang, Gang Xu, 2019, Protein science : a publication of the Protein Society.

Identification of the targets of HbEIN3/EILs in genomic wide in Hevea brasiliensis

Jinling Zhai, Xi Huang, Gang Xu, 2019, Bioscience, biotechnology, and biochemistry.

OPUS‐CSF: A C‐atom‐based scoring function for ranking protein structural models

Jianpeng Ma, Tianwu Zang, Tianqi Ma, 2017, bioRxiv.

OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing.

Jianpeng Ma, Weitao Sun, Tianwu Zang, 2017, Journal of molecular biology.

OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods

Jianpeng Ma, Gang Xu, Qinghua Wang, 2020, J. Chem. Inf. Model..

OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling.

Jianpeng Ma, Gang Xu, Qinghua Wang, 2020, Journal of chemical theory and computation.

OPUS-Rota2: An Improved Fast and Accurate Side-chain Modeling Method.

Jianpeng Ma, Tianqi Ma, Qinghua Wang, 2019, Journal of chemical theory and computation.

OPUS-TASS: a protein backbone torsion angles and secondary structure predictor based on ensemble neural networks

Jianpeng Ma, Gang Xu, Qinghua Wang, 2020, Bioinform..

OPUS-Refine: A Fast Sampling-based Framework for Refining Protein Backbone Torsion Angles and Global Conformation.

Jianpeng Ma, Qinghua Wang, Gang Xu, 2020, Journal of chemical theory and computation.

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding

Jianpeng Ma, Gang Xu, Qinghua Wang, 2021, Bioinform..

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding

Jianpeng Ma, Qinghua Wang, Gang Xu, 2021, bioRxiv.

OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow

Jianpeng Ma, Qinghua Wang, Gang Xu, 2023, bioRxiv.

OPUS-Rota4: a gradient-based protein side-chain modeling framework assisted by deep learning-based predictors

Jianpeng Ma, Qinghua Wang, Gang Xu, 2021, bioRxiv.

OPUS-DOSP: A Distance- and Orientation-Dependent All-Atom Potential Derived from Side-Chain Packing.

Jianpeng Ma, Weitao Sun, Qinghua Wang, 2017, Journal of molecular biology.