Mahmoud Ahmed

发表

Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer

S. Zada, D. Kim, Jin Seok Hwang, 2018, Cancers.

Integrating binding and expression data to predict transcription factors combined function

D. Min, D. Kim, Mahmoud Ahmed, 2020, BMC Genomics.

Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data

S. Kang, S. Zada, D. Kim, 2018, Oncotarget.

Tissue-specific gene expression in obese hyperglycemic mice

E. Jeong, G. Roh, D. Kim, 2022, All Life.

RKIP phosphorylation-dependent ERK1 activation stimulates adipogenic lipid accumulation in 3T3-L1 preadipocytes overexpressing LC3.

J. Hahm, D. Kim, Mahmoud Ahmed, 2016, Biochemical and biophysical research communications.

Protein kinase A activation by β‑Lapachone is associated with apoptotic cell death in NQO1‑overexpressing breast cancer cells.

S. Zada, D. Kim, Jin Seok Hwang, 2019, Oncology reports.

Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations

D. Min, D. Kim, Mahmoud Ahmed, 2020, Adipocyte.

Calpain-dependent Beclin1 cleavage stimulates senescence-associated cell death in HT22 hippocampal cells under the oxidative stress conditions

S. Zada, D. Kim, Jin Seok Hwang, 2019, Neuroscience Letters.

Autophagy-mediated degradation of NOTCH1 intracellular domain controls the epithelial to mesenchymal transition and cancer metastasis

S. Zada, Wanil Kim, D. Kim, 2022, Cell & bioscience.

Chlorogenic acid protects human chondrocyte C28/I2 cells from oxidative stress-induced cell death through activation of autophagy.

Jung-Hwan Kim, S. Zada, D. Kim, 2021, Life sciences.

Disruption of cancer cell functions by task-specific drug perturbations

Mahmoud Ahmed, Deok Ryong Kim, 2022, Frontiers in Pharmacology.

Targeting Autophagy for Developing New Therapeutic Strategy in Intervertebral Disc Degeneration

D. Kim, Jin Seok Hwang, T. Lai, 2022, Antioxidants.

Regulation of TGF-β1-Induced EMT by Autophagy-Dependent Energy Metabolism in Cancer Cells

Entaz Bahar, Jin Seok Hwang, T. Lai, 2022, Cancers.

pcr: an R package for quality assessment, analysis and testing of qPCR data

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2018, PeerJ.

Re-implementation of an algorithm to integrate transcriptome and ChIP-seq data

D. Kim, Mahmoud Ahmed, 2022, bioRxiv.

Cross talk between autophagy and oncogenic signaling pathways and implications for cancer therapy.

S. Zada, D. Kim, Jin Seok Hwang, 2021, Biochimica et biophysica acta. Reviews on cancer.

Autophagy-mediated degradation of NOTCH1 intracellular domain controls the epithelial to mesenchymal transition and cancer metastasis

S. Zada, Wanil Kim, Jin Seok Hwang, 2022, Cell & Bioscience.

A Small Fraction of Progenitors Differentiate Into Mature Adipocytes by Escaping the Constraints on the Cell Structure

D. Kim, T. Lai, Mahmoud Ahmed, 2021, Frontiers in Cell and Developmental Biology.

miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer

D. Kim, T. Lai, H. Nguyen, 2018, BMC Research Notes.

Anti-cancer effect of RKIP via modulating autophagy during metastasis

D. Kim, Mahmoud Ahmed, 2020 .

cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2018, PeerJ.

A Functional Network Model of the Metastasis Suppressor PEBP1/RKIP and Its Regulators in Breast Cancer Cells

W. Kim, D. Kim, T. Lai, 2021, Cancers.

Hierarchical regulation of autophagy during adipocyte differentiation

S. Zada, D. Kim, Jin Seok Hwang, 2021, bioRxiv.

target: an R package to predict combined function of transcription factors

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2021, F1000Research.

Control of the Epithelial-to-Mesenchymal Transition and Cancer Metastasis by Autophagy-Dependent SNAI1 Degradation

S. Zada, D. Kim, Jin Seok Hwang, 2019, Cells.

Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis: A Systematic Study Using Public Gene Expression and Transcription Factor Binding Datasets

S. Zada, D. Kim, Jin Seok Hwang, 2019, Cells.

Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation

Mahmoud Ahmed, Trang Huyen Lai, Huynh Quoc Nguyen, 2018, International journal of molecular sciences.

Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2019, Adipocyte.

A small fraction of progenitors differentiate into mature adipocytes due to constraints on the cell structure change

D. Kim, T. Lai, Mahmoud Ahmed, 2021, bioRxiv.

Manipulating RKIP reverses the metastatic potential of breast cancer cells

Wanil Kim, Jinsung Yang, Jin Seok Hwang, 2023, Frontiers in oncology.

Transcriptional Repression of Raf Kinase Inhibitory Protein Gene by Metadherin during Cancer Progression

S. Zada, D. Kim, Jin Seok Hwang, 2021, International journal of molecular sciences.

Re-implementation of an algorithm to integrate transcriptome and ChIP-seq data

D. Kim, Mahmoud Ahmed, 2023, bioRxiv.

LINPS: a database for cancer-cell-specific perturbations of biological networks

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2021, Database J. Biol. Databases Curation.

Maximizing the utility of public data

Mahmoud Ahmed, Deok Ryong Kim, Mahmoud Ahmed, 2023, Frontiers in Genetics.

Editorial: Opportunities and challenges in reusing public genomics data

Mahmoud Ahmed, D. Kim, 2023, Frontiers in Pharmacology.

miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer

Mahmoud Ahmed, Deok Ryong Kim, D. Kim, 2018, BMC Research Notes.