Ronald C. Taylor

发表

Gene set analyses for interpreting microarray experiments on prokaryotic organisms

Matthew DeJongh, Aaron A. Best, Nathan L. Tintle, 2008, BMC Bioinformatics.

An analysis pipeline for the inference of protein-protein interaction networks

Mudita Singhal, Kelly Domico, H. Steven Wiley, 2009, Int. J. Data Min. Bioinform..

NEW CHALLENGES FACING INTEGRATIVE BIOLOGICAL SCIENCE IN THE POST-GENOMIC ERA

Tjerk P. Straatsma, Donald R. Jones, Bobbie-Jo M. Webb-Robertson, 2006 .

Network Inference Algorithms Elucidate Nrf2 Regulation of Mouse Lung Oxidative Stress

Mudita Singhal, Deepti Malhotra, Ronald C. Taylor, 2008, PLoS Comput. Biol..

Multi-omics data analysis in the cloud: inference of differential breast cancer-related network hubs between TCGA patient cohorts.

Boris Aguilar, Ronald C. Taylor, George K. Acquaah-Mensah, 2020 .

Automated insertion of sequences into a ribosomal RNA alignment: An application of computational linguistics in molecular biology

Ronald C. Taylor, 1991 .

An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

Ronald C. Taylor, 2010, BMC Bioinformatics.

Learning biological networks via bootstrapping with optimized go-based gene similarity

Marc Verhagen, Antonio Sanfilippo, Bob Baddeley, 2010, BCB '10.

Modeling framework for isotopic labeling of heteronuclear moieties

Ronald C. Taylor, Mark Borkum, Patrick Reardon, 2017, Journal of Cheminformatics.

A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis

Lawrence Hunter, Mary E. Edgerton, Richard Simon, 2002, Bioinform..

An integrated approach to predictive genomic analytics

Antonio Sanfilippo, Bob Baddeley, Jason E. McDermott, 2010, BCB '10.

Proceedings of the second international workshop on Emerging computational methods for the life sciences

Judy Qiu, Ian Foster, Ronald C. Taylor, 2011, HPDC 2011.

Reconciling gene expression data with regulatory network models – a stimulon-based approach for integrated metabolic and regulatory modeling of Bacillus subtilis

Vincent Fromion, Miguel Rocha, Christopher S. Henry, 2014 .

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction

Mudita Singhal, Kelly Domico, G. Hurst, 2007, ICMLA 2007.

Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts

James Pustejovsky, Marc Verhagen, Antonio Sanfilippo, 2011, Int. J. Comput. Biol. Drug Des..

Using the gene ontology to enrich biological pathways

Antonio Sanfilippo, Bob Baddeley, Jason E. McDermott, 2009, Int. J. Comput. Biol. Drug Des..

SEBINI: Software Environment for BIological Network Inference

Anuj Shah, Ronald C. Taylor, Charles Treatman, 2006, Bioinform..

GEST: a gene expression search tool based on a novel Bayesian similarity metric

Lawrence Hunter, Richard Simon, Sonia M. Leach, 2001, ISMB.

SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction

Mudita Singhal, Kelly Domico, Denise Schmoyer, 2007, Sixth International Conference on Machine Learning and Applications (ICMLA 2007).

Modular Semantic Tagging of Medline Abstracts and Its Use in Inferring Regulatory Networks

James Pustejovsky, Marc Verhagen, Antonio Sanfilippo, 2011, 2011 IEEE Fifth International Conference on Semantic Computing.

Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in Salmonella typhimurium

Hyunjin Yoon, Jason E. McDermott, Fred Heffron, 2009, J. Comput. Biol..

Metabolic Network Modeling for Computer‐Aided Design of Microbial Interactions

Doraiswami Ramkrishna, Christopher S. Henry, Hans C. Bernstein, 2018 .

Modeling Dynamic Regulatory Processes in Stroke

Antonio Sanfilippo, Keri B. Vartanian, Mary J. Lancaster, 2012, PLoS Comput. Biol..

Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data

Ronald C. Taylor, José P. Faria, R. Overbeek, 2016, Front. Microbiol..

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

Ronald C. Taylor, Roger E Bumgarner, C. Ball, 2006, Omics : a journal of integrative biology.

Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002

Christopher C. Overall, Ronald C. Taylor, L. McCue, 2016, Nucleic acids research.

Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction

Hans C. Bernstein, Ronald C. Taylor, C. Henry, 2016, Journal of cellular physiology.

Reverse engineering adverse outcome pathways

Stephen W. Edwards, Francesco Falciani, Ronald Taylor, 2011, Environmental toxicology and chemistry.

Biological Network Inference and analysis using SEBINI and CABIN.

Mudita Singhal, Ronald Taylor, Ronald C. Taylor, 2009, Methods in molecular biology.

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Thorsten Henrich, Mirana Ramialison, John Quackenbush, 2008, Nature Biotechnology.

PACAPergic signaling: insights generated from Bayesian network structure learning algorithmic analysis of mouse brain gene expression data

Ronald C. Taylor, G. Acquaah-Mensah, 2012 .

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

Stephen R. Lindemann, Margaret F. Romine, Ronald C. Taylor, 2017, Front. Microbiol..

Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics

Ronald C. Taylor, H. Wiley, L. M. Markillie, 2013, PloS one.

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

Miguel Rocha, Isabel Rocha, Matthew DeJongh, 2016, Front. Microbiol..

, Ronald coli Transcriptional Regulator in Escherichia The Highly Conserved MraZ Protein Is a

Hugh D. Mitchell, Ronald C. Taylor, Galya Orr, 2014 .

Systems biology SEBINI : Software Environment for BIological Network Inference

Ronald C. Taylor, Charles Treatman, Meridith Blevins, 2006 .

A Network Inference Workflow Applied to Virulence‐Related Processes in Salmonella typhimurium

Ronald C. Taylor, J. Mcdermott, M. Singhal, 2009, Annals of the New York Academy of Sciences.

The Toxoplasma gondii Cyst Wall Protein CST1 Is Critical for Cyst Wall Integrity and Promotes Bradyzoite Persistence

Ronald C. Taylor, Kami Kim, L. M. Markillie, 2013, PLoS pathogens.

Steady State Analysis of Integrated Proteomics and Transcriptomics Data Shows Changes in Translational Efficiency a Dominant Regulatory Mechanism in the Environmental Response of Bacteria

Ronald C. Taylor, H. Wiley, L. M. Markillie, 2013 .

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

Ronald C. Taylor, Lye Meng Markillie, Ronald C Taylor, 2013, Integrative biology : quantitative biosciences from nano to macro.

Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

Ronald C. Taylor, J. Mcdermott, W. Chrisler, 2016, ACS nano.

Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage

Ronald C. Taylor, Kami Kim, L. M. Markillie, 2014, PloS one.

Brain in situ hybridization maps as a source for reverse-engineering transcriptional regulatory networks: Alzheimer's disease insights.

Ronald C. Taylor, George K Acquaah-Mensah, Ronald C Taylor, 2016, Gene.

The Highly Conserved MraZ Protein Is a Transcriptional Regulator in Escherichia coli

Ronald C. Taylor, L. M. Markillie, W. Margolin, 2014, Journal of bacteriology.

Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg/pH Medium.

Ronald C. Taylor, Richard D. Smith, J. Adkins, 2009, Journal of proteomics & bioinformatics.

Identification of Differential Gene Expression Patterns after Acute Exposure to High and Low Doses of Low-LET Ionizing Radiation in a Reconstituted Human Skin Tissue

Ronald C. Taylor, L. M. Markillie, S. Tilton, 2016, Radiation Research.

PACAP interactions in the mouse brain: implications for behavioral and other disorders.

Ronald C. Taylor, Ronald C Taylor, Sanjiv V. Bhave, 2012, Gene.

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Ronald C. Taylor, Roger E Bumgarner, C. Ball, 2008, Nature Biotechnology.

Gene set analyses for interpreting microarray experiments on prokaryotic organisms

Ronald C. Taylor, M. DeJongh, A. Best, 2008, BMC Bioinformatics.