M. Chang

发表

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues

S. Panda, G. Benegiamo, O. Dkhissi-Benyahya, 2018, Science.

CoVaMa: Co-Variation Mapper for disequilibrium analysis of mutant loci in viral populations using next-generation sequence data.

John E. Johnson, B. Torbett, A. Routh, 2015, Methods.

ApoC-III ASO promotes tissue LPL activity in the absence of apoE-mediated TRL clearance[S]

Christian M. Metallo, R. Krauss, C. Benner, 2019, Journal of Lipid Research.

Modeling recombination’s role in the evolution of HIV drug resistance

R. Belew, M. Chang, 2006 .

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Olga Tanaseichuk, Alireza Hadj Khodabakhshi, Sumit K Chanda, 2019, Nature Communications.

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Alireza Hadj Khodabakhshi, Yingyao Zhou, S. Chanda, 2019, Nature Communications.

Dynamic activity in cis-regulatory elements of leukocytes identifies transcription factor activation and stratifies COVID-19 severity in ICU patients

A. Malhotra, C. Benner, S. Panda, 2023, Cell Reports Medicine.

A Large-scale Drug Repositioning Survey for SARS-CoV-2 Antivirals

Peter G. Schultz, Ren Sun, Sebastian Burgstaller-Muehlbacher, 2020, bioRxiv.

Diet and feeding pattern modulate diurnal dynamics of the ileal microbiome and transcriptome

A. Saghatelian, S. Panda, A. Saltiel, 2022, Cell reports.

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.

Satchidananda Panda, Max W. Chang, S. Panda, 2019, Cell metabolism.

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism

R. Knight, A. Saghatelian, S. Panda, 2018, Nature Communications.

Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing

S. Chanda, E. Ruppin, J. Chan, 2020, Nature.

Discovery of SARS-CoV-2 Antivirals through Large-scale Drug Repositioning

Eytan Ruppin, Andrew I Su, Ren Sun, 2020, Nature.

Transcription Elongation Can Affect Genome 3D Structure

Max W. Chang, Lars Pache, Adolfo García-Sastre, 2018, Cell.

Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19

A. Malhotra, C. Benner, S. Panda, 2021, bioRxiv.

Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer

Benjamin F. Cravatt, Max W. Chang, Zhou Zhu, 2017, Cell.

Disease tolerance mediated by commensal E . coli via inflammasome and IGF-1 signaling

R. Evans, M. Downes, J. Ayres, 2016 .

Disease tolerance mediated by microbiome E. coli involves inflammasome and IGF-1 signaling

R. Evans, M. Downes, Mathias Leblanc, 2015, Science.

Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy

D. A. Stein, T. Ideker, S. Chanda, 2021, Nature Microbiology.

Viral Determinants in H5N1 Influenza A Virus Enable Productive Infection of HeLa Cells

S. Chanda, C. Benner, L. Riva, 2019, Journal of Virology.

A Genome-Wide CRISPR-Cas9 Screen Reveals the Requirement of Host Cell Sulfation for Schmallenberg Virus Infection

C. Benner, G. Kochs, M. Beer, 2020, Journal of Virology.

Functional Landscape of SARS-CoV-2 Cellular Restriction

T. Ideker, S. Chanda, C. Benner, 2020, bioRxiv.

Hybrid Gene Origination Creates Human-Virus Chimeric Proteins during Infection

Robyn M. Kaake, N. Krogan, J. Yewdell, 2020, Cell.

MHC class II proteins mediate cross-species entry of bat influenza viruses

Martin Beer, Anne Halenius, Max W. Chang, 2019, Nature.

Deep Sequencing of Protease Inhibitor Resistant HIV Patient Isolates Reveals Patterns of Correlated Mutations in Gag and Protease

Zhiqiang Tan, Ronald M. Levy, Jinyun Yuan, 2015, PLoS Comput. Biol..

Accessory mutations maintain stability in drug-resistant HIV-1 protease.

B. Torbett, Bruce E Torbett, Max W Chang, 2011, Journal of molecular biology.

Functional landscape of SARS-CoV-2 cellular restriction

Mary K. Lewinski, T. Ideker, S. Chanda, 2021, Molecular Cell.

SHMT2 and the BRCC36/BRISC deubiquitinase regulate HIV-1 Tat K63-ubiquitylation and destruction by autophagy

J. Diedrich, J. Yates, K. Jones, 2018, PLoS pathogens.

Identification and dynamic quantification of regulatory elements using total RNA

C. Benner, S. Heinz, S. Duttke, 2019, Genome Research.

Influenza virus repurposes the antiviral protein IFIT2 to promote translation of viral mRNAs

M. Diamond, C. Benner, A. García-Sastre, 2020, Nature Microbiology.

Influenza virus repurposes the antiviral protein IFIT2 to promote translation of viral mRNAs

M. Diamond, C. Benner, A. García-Sastre, 2020, Nature Microbiology.

Type I IFN promotes pathogenic inflammatory monocyte maturation during H5N1 infection

S. Chanda, N. Krogan, C. Benner, 2022, bioRxiv.

Computational structure-based methods to anticipate HIV drug resistance evolution and accelerate inhibitor discovery - eScholarship

M. Chang, 2008 .

Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries

Max W. Chang, William Lindstrom, Arthur J. Olson, 2007, J. Chem. Inf. Model..

Glucocorticoid Receptor-Regulated Enhancers Play a Central Role in the Gene Regulatory Networks Underlying Drug Addiction

A. Palmer, C. Benner, Hai-Ri Li, 2022, bioRxiv.

Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies

C. Glass, C. Benner, K. Jepsen, 2018, The Journal of Immunology.

A comprehensive multiomics approach toward understanding the relationship between aging and dementia

P. Maher, O. Quehenberger, Aaron M. Armando, 2015, Aging.

Identification of HIV-1 inhibitors targeting the nucleocapsid protein.

S. Breuer, B. Torbett, Jinyun Yuan, 2012, Journal of medicinal chemistry.

Rapid deep sequencing of patient-derived HIV with ion semiconductor technology.

Glenn Oliveira, Jinyun Yuan, B. Torbett, 2013, Journal of virological methods.

Virtual Screening for HIV Protease Inhibitors: A Comparison of AutoDock 4 and Vina

Max W. Chang, Christian Ayeni, S. Breuer, 2010, PloS one.

Discovery of UFO Proteins: Human-Virus Chimeric Proteins Generated During Influenza Virus Infection

N. Krogan, J. Yewdell, C. Benner, 2019, bioRxiv.

Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes

David S. Goodsell, Arthur J. Olson, Richard K. Belew, 2008, J. Comput. Chem..

MHC class II proteins mediate cross-species entry of bat influenza viruses

C. Benner, A. Oxenius, M. Beer, 2019, Nature.

Small molecule regulation of protein conformation by binding in the Flap of HIV protease.

A. Olson, B. Torbett, C. Stout, 2013, ACS chemical biology.

Breakthrough infections by SARS-CoV-2 variants boost cross-reactive hybrid immune responses in mRNA-vaccinated Golden Syrian Hamsters

C. Benner, A. García-Sastre, L. Pache, 2023, bioRxiv.

GR-regulated enhancers play a central role in the gene regulatory networks underlying drug addiction

C. Benner, S. Duttke, L. Carrette, 2022 .

Oral arsenic administration to humanizedUDP-glucuronosyltransferase1 neonatal mice induces UGT1A1 through a dependence on Nrf2 and PXR

R. Tukey, C. Benner, Shujuan Chen, 2023, The Journal of biological chemistry.

Identification of broad-based HIV-1 protease inhibitors from combinatorial libraries.

Sukwon Hong, Rolf Muller, Dale L Boger, 2010, The Biochemical journal.

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.

H. Le, M. Chang, T. Lin, 2019, Cell metabolism.

Analysis of HIV Wild‐Type and Mutant Structures via in silico Docking Against Diverse Ligand Libraries.

Arthur J. Olson, Richard K. Belew, Max W. Chang, 2007 .