Bauke Ylstra

发表

A multi-platform reference for somatic structural variation detection

Andy Wing Chun Pang, Tobias Marschall, Wigard P. Kloosterman, 2020, bioRxiv.

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data

Ruud H. Brakenhoff, Bauke Ylstra, Mark A. van de Wiel, 2005, Bioinform..

Chromosomal Breakpoint Detection in Human Cancer

Elena Marchiori, Aad van der Vaart, Bauke Ylstra, 2003, EvoWorkshops.

Preprocessing and downstream analysis of microarray DNA copy number profiles

Franck Picard, Wessel N. van Wieringen, Bauke Ylstra, 2011, Briefings Bioinform..

CGHcall: Calling aberrations for array CGH tumor proﬁles.

Wessel N. van Wieringen, Bauke Ylstra, Kyung In Kim, 2008 .

ACE: absolute copy number estimation from low-coverage whole-genome sequencing data

Ruud H. Brakenhoff, Bauke Ylstra, Daoud Sie, 2019, Bioinform..

CGHpower: exploring sample size calculations for chromosomal copy number experiments

Bauke Ylstra, Mark A. van de Wiel, Gerrit Meijer, 2010, BMC Bioinformatics.

Normalized , Segmented or Called aCGH Data ?

Mark A. van de Wiel, Bauke Ylstra, Wessel N. van Wieringen, 2009 .

ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data

Jeroen Beliën, Wessel N. van Wieringen, Bauke Ylstra, 2006, Bioinform..

Breakpoint identification and smoothing of array comparative genomic hybridization data

Elena Marchiori, Aad van der Vaart, Bauke Ylstra, 2004, Bioinform..

Abstract 52: QDNAseq: A bioinformatics pipeline for DNA copy number analysis from shallow whole genome sequencing with noise levels near the probabilistic lower limit imposed by read counting

Bauke Ylstra, Mark A. van de Wiel, Martijn Cordes, 2016 .

Smoothing waves in array CGH tumor profiles

Marieke E. Timmerman, Paul H. C. Eilers, Björn Menten, 2009, Bioinform..

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

Wessel N. van Wieringen, Bauke Ylstra, Mark A. van de Wiel, 2011, BMC Bioinformatics.

Oligonucleotide array comparative genomic hybridization.

Bauke Ylstra, B. Ylstra, Paul van den Ijssel, 2007, Methods in molecular biology.

Copy-number signatures and mutational processes in ovarian carcinoma

Oliver Hofmann, David Millan, Florian Markowetz, 2017, Nature Genetics.

Sequencing Structural Variants in Cancer for Precision Therapeutics.

Bauke Ylstra, Geoff Macintyre, J. Brenton, 2016, Trends in genetics : TIG.

Losses of chromosome 5q and 14q are associated with favorable clinical outcome of patients with gastric cancer.

Wessel N van Wieringen, Cornelis J H van de Velde, Beatriz Carvalho, 2012, The oncologist.

Gene expression analysis reveals a gene set discriminatory to different metals in soil.

Douwe Molenaar, Bauke Ylstra, Benjamin Nota, 2010, Toxicological sciences : an official journal of the Society of Toxicology.

Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells

Elizabeth Kerr, Paul Perry, Bauke Ylstra, 2008, PLoS genetics.

Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer

Mark A van de Wiel, Bauke Ylstra, Maarten Neerincx, 2018, PloS one.

Comprehensive genomic meta-analysis identifies intra-tumoural stroma as a predictor of survival in patients with gastric cancer

Bauke Ylstra, Alex Boussioutas, Jacinta Murray, 2012, Gut.

Genomic stability and functional activity may be lost in telomerase-transduced human CD8+ T lymphocytes.

Bauke Ylstra, Erik Hooijberg, C. Meijer, 2005, Blood.

Identification of Lethal microRNAs Specific for Head and Neck Cancer

Reuven Agami, Wessel N van Wieringen, Bauke Ylstra, 2013, Clinical Cancer Research.

Postmortem Examination of an Aggressive Case of Medullary Thyroid Carcinoma Characterized by Catastrophic Genomic Abnormalities.

Bauke Ylstra, Diether Lambrechts, Bruce Moran, 2017, JCO precision oncology.

Focal chromosomal copy number aberrations in cancer-Needles in a genome haystack.

Beatriz Carvalho, Bauke Ylstra, Oscar Krijgsman, 2014, Biochimica et biophysica acta.

CopywriteR: DNA copy number detection from off-target sequence data

Jos Jonkers, Ekaterina Nevedomskaya, Bauke Ylstra, 2015, Genome Biology.

Integrated Genomics Identifies Five Medulloblastoma Subtypes with Distinct Genetic Profiles, Pathway Signatures and Clinicopathological Features

Dirk Troost, Jan Koster, Rogier Versteeg, 2008, PloS one.

Gene‐dosage dependent overexpression at the 13q amplicon identifies DIS3 as candidate oncogene in colorectal cancer progression

Beatriz Carvalho, Bauke Ylstra, Erik Hooijberg, 2014, Genes, chromosomes & cancer.

Copy-number signatures and mutational processes in ovarian carcinoma

Oliver Hofmann, David Millan, James D. Brenton, 2017 .

Integrated genomic and transcriptional profiling identifies chromosomal loci with altered gene expression in cervical cancer

Wessel N van Wieringen, Yajun Yi, Saskia M Wilting, 2008, Genes, chromosomes & cancer.

Determination of amplicon boundaries at 20q13.2 in tissue samples of human gastric adenocarcinomas by high‐resolution microarray comparative genomic hybridization

Bauke Ylstra, Daniel Pinkel, Marjan M Weiss, 2003, The Journal of pathology.

RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics

Pieter Wesseling, Jaap C. Reijneveld, Jan Koster, 2015, Cancer cell.

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly

Pieter Wesseling, Mark A van de Wiel, Bauke Ylstra, 2014, Genome research.

In vivo induction of resistance to gemcitabine results in increased expression of ribonucleotide reductase subunit M1 as the major determinant.

Bauke Ylstra, Godefridus J Peters, G. Peters, 2005, Cancer research.

Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

Marcel J T Reinders, Gert Holstege, Mark A. Miller, 2014, Genome research.

EGFR mutation analysis in sputum of lung cancer patients: a multitechnique study.

Bauke Ylstra, Daoud Sie, Erik Thunnissen, 2013, Lung cancer.