Hirotada Mori

发表

Gene Classification Method Based on Batch-Learning SOM

Hideo Matsuda, Takashi Abe, Yoshihiro Kudo, 1999 .

Systematic sequencing of the Escherichia coli genome: analysis of the 0- 2.4 min region

Nobuyuki Fujita, Hirotada Mori, Takashi Yura, 1992, Nucleic Acids Res..

GenoBase: comprehensive resource database of Escherichia coli K-12

Daisuke Kihara, Walid G. Aref, Michael Gribskov, 2014, Nucleic Acids Res..

KEGG-Based Pathway Visualization Tool for Complex Omics Data

Masaru Tomita, Nobuaki Kono, Kazuharu Arakawa, 2005, Silico Biol..

Visualization of Sequence and Biological Data in DNA Data Bank of Japan

Takuro Tamura, Kousuke Goto, Hideaki Sugawara, 1997 .

A server-client version of “Genomatica” integrated genome information browser

Takahiro Yakoh, Yutaka Akiyama, Naotake Ogasawara, 1994 .

Spatial Tactile and Auditory Brain Computer Interface based on Head Position Stimulation

Danilo P. Mandic, Shoji Makino, Zbigniew R. Struzik, 2013 .

Genomatica: an integrated data management and analysis tool for genome sequencing projects

Tetsuya Furukawa, Yutaka Akiyama, Kenji Sato, 1993 .

Extensive impact of non-antibiotic drugs on human gut bacteria

Peer Bork, Kiran Raosaheb Patil, Michael Kuhn, 2018, Nature.

Towards design of the genomes; Fundamental basis for the synthetic approach

Hirotada Mori, 2010 .

Microarray Visualization System on the G-Language GAE

Masaru Tomita, Hirotada Mori, Yohei Yamada, 2003 .

Novel spatial tactile and bone-conduction auditory brain computer interface

Shoji Makino, Tomasz M. Rutkowski, Koichi Mori, 2013 .

Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model

Hiroshi Matsuno, Zhongyuan Tian, Adrien Fauré, 2013, BMC Systems Biology.

From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli.

Hirotada Mori, H. Mori, 2004, Journal of biochemistry and molecular biology.

Genome-scale identification and characterization of moonlighting proteins

Daisuke Kihara, Ishita Khan, Hirotada Mori, 2014, Biology Direct.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Hirotada Mori, Katsumi Isono, 2006, Molecular systems biology.

A robust platform for chemical genomics in bacterial systems

Hirotada Mori, Shawn French, Eric D Brown, 2016, Molecular biology of the cell.

Inhibitory effect of phosphoenolpyruvate on glycolytic enzymes in Escherichia coli.

Masaru Tomita, Masataka Yoshino, Hirotada Mori, 2007, Research in microbiology.

The protein network of bacterial motility

Johannes Goll, Peter Uetz, Seesandra V Rajagopala, 2007 .

HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination

Hachiro Inokuchi, Hirotada Mori, Taku Oshima, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Unprecedented High-Resolution View of Bacterial Operon Architecture Revealed by RNA Sequencing

Barry L. Wanner, Hirotada Mori, Akira Ishihama, 2014, mBio.

Glycogen is the primary source of glucose during the lag phase of E. coli proliferation.

Hiroshi Matsuno, Tomoyoshi Soga, Adrien Fauré, 2012, Biochimica et biophysica acta.

GlgS, described previously as a glycogen synthesis control protein, negatively regulates motility and biofilm formation in Escherichia coli.

Manuel Cánovas, Ángel Sevilla, Hirotada Mori, 2013, The Biochemical journal.

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology

Peter Uetz, James C. Hu, Seesandra V Rajagopala, 2010, BMC Genomics.

Identification of the Two Missing Bacterial Genes Involved in Thiamine Salvage: Thiamine Pyrophosphokinase and Thiamine Kinase

Olga Vassieva, Hirotada Mori, Tadhg P. Begley, 2004, Journal of bacteriology.

General Enzymatic Screens Identify Three New Nucleotidases in Escherichia coli

Hirotada Mori, H. Mori, M. Kitagawa, 2004, Journal of Biological Chemistry.

Escherichia coli with a linear genome

Naotake Ogasawara, Hirotada Mori, Hironori Niki, 2007, EMBO reports.

Genome plasticity as a paradigm of eubacteria evolution

Takeshi Itoh, Takashi Gojobori, Hidemi Watanabe, 2009, Journal of Molecular Evolution.

Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13 C metabolic flux analysis

Chikara Furusawa, Hirotada Mori, Takashi Hirasawa, 2012, Microbial Cell Factories.

Genome-wide Analysis of Substrate Specificities of the Escherichia coli Haloacid Dehalogenase-like Phosphatase Family*

Liran Carmel, Eugene V Koonin, Hirotada Mori, 2006, Journal of Biological Chemistry.

Antigen receptor repertoire profiling from RNA-seq data

Elizabeth Brunk, Anand Sastry, Adam M. Feist, 2022 .

Essential core of protein-protein interaction network in Escherichia coli.

Hsuan-Cheng Huang, Chen-Ching Lin, Hsueh-Fen Juan, 2009, Journal of proteome research.

Predicting essential genes based on network and sequence analysis.

Hsuan-Cheng Huang, Chen-Ching Lin, Hsueh-Fen Juan, 2009, Molecular bioSystems.

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.

Hirotada Mori, Yuta Otsuka, Rikiya Takeuchi, 2015, Methods in molecular biology.

Transcriptome analysis of all two‐component regulatory system mutants of Escherichia coli K‐12

Takeshi Mizuno, Shigehiko Kanaya, Hirotada Mori, 2002, Molecular microbiology.

Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis.

Shigehiko Kanaya, Makoto Kinouchi, Atsushi Fukushima, 2002, Gene.

Update on the Keio collection of Escherichia coli single-gene deletion mutants

Masaru Tomita, Hirotada Mori, Natsuko Yamamoto, 2009, Molecular systems biology.

B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli

Hirotada Mori, Yoko Eguchi, Akinori Kato, 2007, Proceedings of the National Academy of Sciences.

Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate.

Hirotada Mori, Kazuyuki Shimizu, Tomoya Baba, 2004, Metabolic engineering.

Identification and Molecular Characterization of the Mg2+ Stimulon of Escherichia coli

Hirotada Mori, Akira Ishihama, Taku Oshima, 2003, Journal of bacteriology.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Bernhard Ø. Palsson, Jennifer L. Reed, 2006, Journal of bacteriology.

Analysis of Gene Expression in Escherichia coli in Response to Changes of Growth-Limiting Nutrient in Chemostat Cultures

Chen Yang, Hirotada Mori, Kazuyuki Shimizu, 2004, Applied and Environmental Microbiology.

KAREIDMAP: A System for Predicting and Mining Gene Regulatory Networks

Hironori Mizuguchi, Dai Kusui, Shigehiko Kanaya, 2003 .

Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis.

Shigehiko Kanaya, Atsushi Fukushima, Hirotada Mori, 2002, Genome informatics. International Conference on Genome Informatics.

Colony-live — a high-throughput method for measuring microbial colony growth kinetics— reveals diverse growth effects of gene knockouts in Escherichia coli

Takeyuki Tamura, Hirotada Mori, Ai Muto, 2014, BMC Microbiology.

Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35‐amino‐acid cell‐killing peptide and a cis‐encoded small antisense RNA in Escherichia coli

Hirotada Mori, Taku Oshima, Hiroaki Kasai, 2002, Molecular microbiology.

Glutathione production by efficient ATP-regenerating Escherichia coli mutants.

Hirotada Mori, Kiyotaka Y Hara, Tomoya Baba, 2009, FEMS microbiology letters.

Statistical Analysis of Genomic Information: Various Periodicities in DNA Sequence

Shigehiko Kanaya, Makoto Kinouchi, Atsushi Fukushima, 2001 .

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

Yukako Tohsato, Hirotada Mori, Masahiro Ito, 2010, Journal of bioinformatics and computational biology.

Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology.

Yukako Tohsato, Hirotada Mori, H. Mori, 2008, Genome informatics. International Conference on Genome Informatics.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Martha B. Arnaud, Jeremy D. Glasner, 2006, Nucleic acids research.

Heat induction of θ32 synthesis mediated by mRNA secondary structure: a primary step of the heat shock response in Escherichia coli

Hirotada Mori, Takashi Yura, Hiroki Nagai, 1993 .

Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli

Masaru Tomita, Hirotada Mori, Kenji Nakahigashi, 2011, BMC Genomics.

Effects of mutations in the rpoS gene on cell viability and global gene expression under nitrogen starvation in Escherichia coli.

Hirotada Mori, Taku Oshima, Mamoru Yamada, 2004, Microbiology.

Dynamic simulation of an in vitro multi‐enzyme system

Masaru Tomita, Masataka Yoshino, Hirotada Mori, 2007, FEBS letters.

Signal Transduction Cascade between EvgA/EvgS and PhoP/PhoQ Two-Component Systems of Escherichia coli

Hirotada Mori, Akira Ishihama, Taku Oshima, 2004, Journal of bacteriology.

Heat shock regulation in the ftsH null mutant of Escherichia coli: dissection of stability and activity control mechanisms of σ32in vivo

Hirotada Mori, Bernd Bukau, H. Mori, 1998, Molecular microbiology.

In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes

Hirotada Mori, Tomoaki Matsuura, Yasuhiko Kato, 2016, Scientific Reports.

eSGA: E. coli synthetic genetic array analysis

Huiming Ding, Andrew Emili, Gabriel Moreno-Hagelsieb, 2008, Nature Methods.

Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays.

Hirotada Mori, Tomoya Baba, T. Baba, 2005, Metabolic engineering.