Matti Kankainen

POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets

Liisa Holm, Matti Kankainen, L. Holm, 2005, Nucleic Acids Res..

MATLIGN: a motif clustering, comparison and matching tool

Ari Löytynoja, Matti Kankainen, A. Löytynoja, 2007, BMC Bioinformatics.

POXO: a web-enabled tool series to discover transcription factor binding sites

Liisa Holm, Petri Törönen, Päivi Rosenström, 2006, Nucleic Acids Res..

LOCP - locating pilus operons in Gram-positive bacteria

Liisa Holm, Ilya Plyusnin, Matti Kankainen, 2009, Bioinform..

BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins

Liisa Holm, Matti Kankainen, Teija Ojala, 2012, BMC Bioinformatics.

POBO, transcription factor binding site verification with bootstrapping

Liisa Holm, Matti Kankainen, L. Holm, 2004, Nucleic Acids Res..

MPEA - metabolite pathway enrichment analysis

Matej Oresic, Liisa Holm, Peddinti V. Gopalacharyulu, 2011, Bioinform..