Karim Beguir

发表

Ranked Reward: Enabling Self-Play Reinforcement Learning for Bin packing

Mohamed Khalil Jabri, Yunguan Fu, T. Dahl, 2018 .

Multi-objective quality diversity optimization

Antoine Cully, Karim Beguir, Thomas Pierrot, 2022, GECCO.

Peptide-MHC Structure Prediction With Mixed Residue and Atom Graph Neural Network

Marcin J. Skwark, Yunguan Fu, U. Şahin, 2022, bioRxiv.

Mava: a research framework for distributed multi-agent reinforcement learning pdf

Willie Brink, Arnu Pretorius, Herman Kamper, 2021, ArXiv.

The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Marcin J. Skwark, Christian Dallago, Karim Beguir, 2023, bioRxiv.

Ranked Reward: Enabling Self-Play Reinforcement Learning for Combinatorial Optimization pdf

Yunguan Fu, Alexandre Laterre, Mohamed Khalil Jabri, 2018, ArXiv.

Designing a Prospective COVID-19 Therapeutic with Reinforcement Learning pdf

Marcin J. Skwark, Alexandre Laterre, Amine Kerkeni, 2020, ArXiv.

The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Marcin J. Skwark, Christian Dallago, Christian Dallago, 2023, bioRxiv.

Progressive loss of conserved spike protein neutralizing antibody sites in Omicron sublineages is balanced by preserved T-cell recognition epitopes

Yunguan Fu, S. Hoehl, S. Ciesek, 2022, bioRxiv.

Early computational detection of potential high-risk SARS-CoV-2 variants

Marcin J. Skwark, Yunguan Fu, U. Şahin, 2021, bioRxiv.

Learning Compositional Neural Programs with Recursive Tree Search and Planning

Nando de Freitas, Olivier Sigaud, Scott Reed, 2019, NeurIPS.

A game-theoretic analysis of networked system control for common-pool resource management using multi-agent reinforcement learning pdf

Arnu Pretorius, Elan Van Biljon, Alexandre Laterre, 2020, NeurIPS.

QD-RL: Efficient Mixing of Quality and Diversity in Reinforcement Learning pdf

Olivier Sigaud, Karim Beguir, Thomas Pierrot, 2020, ArXiv.

Fast Population-Based Reinforcement Learning on a Single Machine

Karim Beguir, Thomas Pierrot, Arthur Flajolet, 2022, ICML.

Diversity policy gradient for sample efficient quality-diversity optimization

Antoine Cully, Olivier Sigaud, Geoffrey Cideron, 2020, GECCO.

So ManyFolds, So Little Time: Efficient Protein Structure Prediction With pLMs and MSAs

Benoit Gaujac, Karim Beguir, Elia Saquand, 2024, bioRxiv.

Assessing Quality-Diversity Neuro-Evolution Algorithms Performance in Hard Exploration Problems

Antoine Cully, Karim Beguir, Thomas Pierrot, 2022, ArXiv.

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

Sam P. B. van Beljouw, Jeroen Van Goey, Amandla Mabona, 2023, bioRxiv.

Learning Compositional Neural Programs for Continuous Control

Feryal M. P. Behbahani, N. D. Freitas, Nicolas Perrin, 2020, ArXiv.

Offline Reinforcement Learning Hands-On pdf

Olivier Sigaud, Alexandre Laterre, Karim Beguir, 2020, ArXiv.

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

Sam P. B. van Beljouw, Jeroen Van Goey, A. H. Laustsen, 2024, bioRxiv.

A Foundational Large Language Model for Edible Plant Genomes

Maša Roller, Alexandre Laterre, B. P. de Almeida, 2024, bioRxiv.

LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks

Yunguan Fu, U. Şahin, Liviu Copoiu, 2023, bioRxiv.

Progressive loss of conserved spike protein neutralizing antibody sites in Omicron sublineages is balanced by preserved T cell immunity.

Yunguan Fu, S. Hoehl, S. Ciesek, 2023, Cell reports.

Diversity policy gradient for sample efficient quality-diversity optimization

Antoine Cully, Olivier Sigaud, Geoffrey Cideron, 2020, GECCO.

The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Marcin J. Skwark, Christian Dallago, Karim Beguir, 2023, bioRxiv.

Protein binding affinity prediction under multiple substitutions applying eGNNs on Residue and Atomic graphs combined with Language model information: eGRAL

Karim Beguir, Oliver Bent, Arturo Fiorellini-Bernardis, 2024, 2405.02374.

ChatNT: A Multimodal Conversational Agent for DNA, RNA and Protein Tasks

Lorenz Hexemer, Alexandre Laterre, B. P. de Almeida, 2024, bioRxiv.

SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models

Lorenz Hexemer, Alexandre Laterre, B. P. de Almeida, 2024, bioRxiv.