Gil McVean

发表

Ultra-fast search of all deposited bacterial and viral genomic data

Phelim Bradley, Henk C den Bakker, Eduardo P C Rocha, 2019, Nature Biotechnology.

Real-time search of all bacterial and viral genomic data

Phelim Bradley, Gil McVean, Zamin Iqbal, 2017, bioRxiv.

Integrating genealogical and dynamical modelling to infer escape and reversion rates in HIV epitopes

Gil McVean, Angela R. McLean, Duncan Palmer, 2013, Proceedings of the Royal Society B: Biological Sciences.

Multi-Population Classical HLA Type Imputation

Alexander T. Dilthey, Gil McVean, Matthew R. Nelson, 2013, PLoS Comput. Biol..

High-accuracy HLA type inference from whole-genome sequencing data

Gil McVean, Zamin Iqbal, Alexander Dilthey, 2015, bioRxiv.

Improved genome inference in the MHC using a population reference graph

Gil McVean, Zamin Iqbal, Charles Cox, 2014 .

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

Peter Donnelly, Gil McVean, Alexander Dilthey, 2017 .

HLA*IMP - an integrated framework for imputing classical HLA alleles from SNP genotypes

Alexander T. Dilthey, Gil McVean, Loukas Moutsianas, 2011, Bioinform..

Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

Gil McVean, Sha Joe Zhu, Jacob Almagro-Garcia, 2017, bioRxiv.

Integrating long-range connectivity information into de Bruijn graphs

Gil McVean, Zamin Iqbal, Kiran V. Garimella, 2017 .

High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs

Alexander T. Dilthey, Gil McVean, Zamin Iqbal, 2016, PLoS Comput. Biol..

HLA*PRG:LA – HLA typing from linearly projected graph alignments

Adam M. Phillippy, Gil McVean, Alexander Dilthey, 2018, bioRxiv.

Integrating long-range connectivity information into de Bruijn graphs

Gil McVean, Zamin Iqbal, Kiran V. Garimella, 2017, bioRxiv.

Building the Human Wiring Diagram

Gil McVean, 2018 .

High-throughput microbial population genomics using the Cortex variation assembler

Gil McVean, Zamin Iqbal, Isaac Turner, 2012, Bioinform..

The 100,000 Genomes Project Protocol

Gil McVean, Jim Davies, Mark J. Caulfield, 2017 .

HLA*LA—HLA typing from linearly projected graph alignments

Sergey Koren, Gil McVean, Adam M Phillippy, 2019, Bioinform..

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

Mark Gerstein, Gil McVean, Laurent Duret, 2013, Genome research.

Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis

Phelim Bradley, Gil McVean, Zamin Iqbal, 2015, bioRxiv.

Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

Gil McVean, Zamin Iqbal, Alistair Miles, 2016, Genome research.

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

Gil McVean, Alistair Miles, Sha Joe Zhu, 2018, bioRxiv.

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

David A. Clifton, Gil McVean, Zamin Iqbal, 2015, Nature Microbiology.

Human genome sequence variation and the influence of gene history, mutation and recombination

Eric S. Lander, Gil McVean, James C. Mullikin, 2002, Nature Genetics.

Systematic classification of shared components of genetic risk for common human diseases

Gil McVean, Calliope A. Dendrou, Lars Fugger, 2018, bioRxiv.

Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank

Peter Donnelly, Gil McVean, Alexander Dilthey, 2017, Nature Genetics.

Estimating Selection Coefficients in Spatially Structured Populations from Time Series Data of Allele Frequencies

Gil McVean, Iain Mathieson, G. McVean, 2013, Genetics.

Inferring whole-genome histories in large population datasets

Gil McVean, Jerome Kelleher, G. McVean, 2019, Nature Genetics.

Imputation of KIR Types from SNP Variation Data

Gil McVean, Alexander Dilthey, Andre Franke, 2015, American journal of human genetics.

A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

Gil McVean, Zamin Iqbal, Epameinondas Fritzilas, 2016 .

Genetic characterization of Greek population isolates reveals strong genetic drift at missense and trait-associated variants

Gil McVean, Rebecca N. Nsubuga, Vasiliki Mamakou, 2014, Nature Communications.

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Phelim Bradley, Gil McVean, Zamin Iqbal, 2015, Nature Communications.

Whole-genome sequencing of bladder cancers reveals somatic CDKN1A mutations and clinicopathological associations with mutation burden

Peter Donnelly, Gil McVean, Paolo Piazza, 2014, Nature Communications.

A new multipoint method for genome-wide association studies via imputation of genotypes : Supplementary Methods

Peter Donnelly, Gil McVean, Simon Myers, 2007 .

Stable recombination hotspots in birds

Gil McVean, Simon C. Griffith, Molly Przeworski, 2015, Science.

Perspectives on Human Genetic Variation from the HapMap Project

Gil McVean, C. Spencer, G. McVean, 2005, PLoS genetics.

Homozygous mutations in a predicted endonuclease are a novel cause of congenital dyserythropoietic anemia type I

Peter Donnelly, Gil McVean, Chris P. Ponting, 2013, Haematologica.

The Influence of Recombination on Human Genetic Diversity

Peter Donnelly, Gil McVean, Simon Myers, 2006, PLoS genetics.

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

Phelim Bradley, Gil McVean, Zamin Iqbal, 2016, Nature Communications.

Improved genome inference in the MHC using a population reference graph

Gil McVean, Zamin Iqbal, Alexander Dilthey, 2014, Nature Genetics.

Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses

Gil McVean, Zamin Iqbal, Alistair Miles, 2015, bioRxiv.

Hypervariable antigen genes in malaria have ancient roots

Gil McVean, Philip Awadalla, G. McVean, 2013, BMC Evolutionary Biology.

Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073

Ken Chen, Joshua M. Korn, Afidalina Tumian, 2010 .

The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria

Gil McVean, Alistair Miles, Sha Joe Zhu, 2018, bioRxiv.

Clinical whole-genome sequencing in severe early-onset epilepsy reveals new genes and improves molecular diagnosis

Peter Donnelly, Gil McVean, Jean-Baptiste Cazier, 2014, Human molecular genetics.

A statistical method for predicting classical HLA alleles from SNP data.

Peter Donnelly, Gil McVean, Stephen Leslie, 2008, American journal of human genetics.

Identifying recombination hotspots using population genetic data

Gil McVean, Simon Myers, Adam Auton, 2014, 1403.4264.

Strong male bias drives germline mutation in chimpanzees

Gil McVean, Ronald Bontrop, Isaac Turner, 2014, Science.

Dating genomic variants and shared ancestry in population-scale sequencing data

Gil McVean, G. McVean, Patrick K. Albers, 2018, bioRxiv.

A common sequence motif associated with recombination hot spots and genome instability in humans

Peter Donnelly, Gil McVean, Simon Myers, 2008, Nature Genetics.

The Structure of Linkage Disequilibrium Around a Selective Sweep

Gil McVean, G. McVean, 2007, Genetics.

Demography and the Age of Rare Variants

Gil McVean, Iain Mathieson, G. McVean, 2014, PLoS genetics.