B. Dimitrov

发表

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

Lillian M. Khan, Katrina L Kalantar, E. Crawford, 2019, mBio.

Metagenotyping, the identification of intraspecific genetic variants in metagenomic data, is a powerful approach to characterizing population genetic diversity in microbiomes. Most pipelines identify variants based on alignment of reads to reference databases of microbial genomes and/or gene sequenc

K. Pollard, Stephen Nayfach, Boris Dimitrov, 2022 .

MIDAS2: Metagenomic Intra-species Diversity Analysis System

K. Pollard, Stephen Nayfach, Boris Dimitrov, 2022, bioRxiv.

Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda

Yun-Fang Juan, Joseph L DeRisi, Jennifer Hsu, 2019, PloS one.

Fast and accurate metagenotyping of the human gut microbiome with GT-Pro

K. Pollard, Stephen Nayfach, Boris Dimitrov, 2021, Nature Biotechnology.

Ultra-rapid metagenotyping of the human gut microbiome

K. Pollard, Stephen Nayfach, Z. Shi, 2020, bioRxiv.

Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis

Katrina L Kalantar, J. Derisi, P. Rosenthal, 2018, bioRxiv.

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

Ryan King, Yun-Fang Juan, Boris Dimitrov, 2020, bioRxiv.

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences

N. Neff, E. Crawford, J. Derisi, 2018, bioRxiv.