Rebecca Egger

Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens

Lillian M. Khan, Katrina L Kalantar, E. Crawford, 2019, mBio.

Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda

Yun-Fang Juan, Joseph L DeRisi, Jennifer Hsu, 2019, PloS one.

Etiology of fever in Ugandan children: identification of microbial pathogens using metagenomic next-generation sequencing and IDseq, a platform for unbiased metagenomic analysis

Katrina L Kalantar, J. Derisi, P. Rosenthal, 2018, bioRxiv.

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring

Ryan King, Yun-Fang Juan, Boris Dimitrov, 2020, bioRxiv.

Rapid deployment of SARS-CoV-2 testing: The CLIAHUB

James T. Webber, Jeffrey A. Hussmann, John R. Haliburton, 2020, PLoS pathogens.