Mark B. Gerstein

发表

Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood

Forrest W. Crawford, Shantao Li, Mark B. Gerstein, 2020, Nature Communications.

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

Tobias Marschall, Jan O. Korbel, Mark Walker, 2020, bioRxiv.

Quantum computing at the frontiers of biological sciences

Guillermo Sapiro, Jonathan Warrell, John Murray, 2019, Nature Methods.

sigLASSO: optimizing cancer mutation signatures jointly with sampling likelihood

Forrest W. Crawford, Shantao Li, Mark B. Gerstein, 2018 .

Extending gene ontology in the context of extracellular RNA and vesicle communication

Kei-Hoi Cheung, Andrew I. Su, Kasey Vickers, 2016, Journal of biomedical semantics.

Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies

Kei-Hoi Cheung, Andrew I. Su, Bob S. Carter, 2015, Journal of extracellular vesicles.

Quantum computing at the frontiers of biological sciences

Guillermo Sapiro, Aram W. Harrow, Matteo Bastiani, 2019, Nature Methods.

LinkHub : a Semantic Web System for Efficiently Handling Complex Graphs of Proteomics Identifier Relationships that Facilitates Cross-database Queries and Information Retrieval

Kei-Hoi Cheung, Kevin Y. Yip, Mark B. Gerstein, 2006 .

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

Reliability of Whole-Exome Sequencing for Assessing Intratumor Genetic Heterogeneity

Tingting Jiang, Weiwei Shi, Jorge S. Reis-Filho, 2018, bioRxiv.

An integrated approach for finding overlooked genes in yeast

Kei-Hoi Cheung, Nathaniel Echols, Mark B. Gerstein, 2002, Nature Biotechnology.

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Lucas Lochovsky, Donghoon Lee, Chris Sander, 2017, bioRxiv.

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

Lucas Lochovsky, Jakob Skou Pedersen, Calvin Wing Yiu Chan, 2020, Cell.

High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution

Yehudit Hasin, Tsviya Olender, Miriam Khen, 2008, PLoS genetics.

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins

Gary D. Bader, Gary D Bader, Somasekar Seshagiri, 2009, PLoS biology.

Passenger mutations in 2500 cancer genomes: Overall molecular functional impact and consequences

Lucas Lochovsky, Jakob Skou Pedersen, Calvin Wing Yiu Chan, 2018, bioRxiv.

MacArthur Protein-Coding Genes A Systematic Survey of Loss-of-Function Variants in Human

Klaudia Walter, Joseph K. Pickrell, Jennifer Harrow, 2012 .

The genomic complexity of primary human prostate cancer

Eric S. Lander, Kristian Cibulskis, Todd R. Golub, 2010, Nature.

Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context

Jan O. Korbel, Mark B. Gerstein, Philip M. Kim, 2007, Proceedings of the National Academy of Sciences.

Comparative Analysis of the Transcriptome across Distant Species

Peter J. Bickel, Raymond K. Auerbach, Peter J. Park, 2014, Nature.

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project

Zhi John Lu, Mark B. Gerstein, Hugo Y. K. Lam, 2011, Nucleic acids research.

Quantifying environmental adaptation of metabolic pathways in metagenomics

Jan O. Korbel, Peer Bork, Ivica Letunic, 2009, Proceedings of the National Academy of Sciences.

Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis

Wing Hung Wong, Sayed Mohammad Ebrahim Sahraeian, Kin Fai Au, 2017, Nature Communications.

Leveraging protein dynamics to identify cancer mutational hotspots using 3D structures

Mark B. Gerstein, Declan Clarke, Sushant Kumar, 2019, Proceedings of the National Academy of Sciences.