Erik Kristiansson

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TECHNICAL NOTE Open Access

Erik Kristiansson, Anders Sjögren, E. Kristiansson, 2015 .

Predicting functional upstream open reading frames in Saccharomyces cerevisiae

Erik Kristiansson, Christopher H. Bryant, Graham J. L. Kemp, 2009, BMC Bioinformatics.

New Ph.D. students in the empirical sciences should be recruited into ongoing scientific studies right from the start

R. Henrik Nilsson, Erik Kristiansson, Martin Ryberg, 2016 .

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

Erik Kristiansson, Albertas Dvirnas, Christoffer Pichler, 2018, PloS one.

BMC Bioinformatics BioMed Central Methodology article Weighted analysis of general microarray experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo, 2007 .

HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models

Erik Kristiansson, Marina Axelson-Fisk, Mariana Buongermino Pereira, 2016, J. Comput. Biol..

The genetic network of plasmid-mediated antibiotic multiresistance

Erik Kristiansson, Martin Rosvall, Alcides Viamontes Esquivel, 2014 .

A novel method for cross-species gene expression analysis

Erik Kristiansson, Olle Nerman, Tobias Österlund, 2013, BMC Bioinformatics.

Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi

R. Henrik Nilsson, Martin Ryberg, Erik Kristiansson, 2005, BMC Bioinformatics.

Variability in Metagenomic Count Data and Its Influence on the Identification of Differentially Abundant Genes

Erik Kristiansson, Olle Nerman, Tobias Österlund, 2017, J. Comput. Biol..

BacMet: antibacterial biocide and metal resistance genes database

Erik Kristiansson, Christopher Rensing, Johan Bengtsson-Palme, 2013, Nucleic Acids Res..

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes

Erik Kristiansson, Philip Hugenholtz, Daniel Dalevi, 2009, Bioinform..

Weighted Analysis of Paired Microarray Experiments

Erik Kristiansson, Anders Sjögren, Mats Rudemo, 2005, Statistical applications in genetics and molecular biology.

ECOdrug: a database connecting drugs and conservation of their targets across species

Erik Kristiansson, Charles R. Tyler, Jason R. Snape, 2017, Nucleic Acids Res..

Environmental Comparative Pharmacology: Theory and Application

Erik Kristiansson, Lina-Maria Gunnarsson, D. G. Joakim Larsson, 2012 .

Modelling of zero-inflation improves inference of metagenomic gene count data

Erik Kristiansson, Olle Nerman, Tobias Österlund, 2018, Statistical methods in medical research.

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

R. Henrik Nilsson, Gunilla Bok, Erik Kristiansson, 2016 .

Integrative Analysis of Omics Data

Erik Kristiansson, Marija Cvijovic, Tobias Österlund, 2017 .

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

Erik Kristiansson, Johan Bengtsson-Palme, Chandan Pal, 2015, BMC Genomics.

Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics

Erik Kristiansson, Olle Nerman, Tobias Österlund, 2016, BMC Genomics.

Introducing ribosomal tandem repeat barcoding for fungi

Erik Kristiansson, Johan Bengtsson-Palme, R Henrik Nilsson, 2019, Molecular ecology resources.

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies.

Erik Kristiansson, Kessy Abarenkov, Martin Ryberg, 2009, FEMS microbiology letters.

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

R. Henrik Nilsson, Erik Kristiansson, Kessy Abarenkov, 2015, Microbes and environments.

Quality Optimised Analysis of General Paired Microarray Experiments

Erik Kristiansson, Mats Rudemo, Olle Nerman, 2006, Statistical applications in genetics and molecular biology.

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences.

R. Henrik Nilsson, Erik Kristiansson, Nils Hallenberg, 2012 .

Diclofenac in fish: Blood plasma levels similar to human therapeutic levels affect global hepatic gene expression

Erik Kristiansson, Jerker Fick, E. Kristiansson, 2011, Environmental toxicology and chemistry.

Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective

R. Henrik Nilsson, Erik Kristiansson, Kessy Abarenkov, 2006, PloS one.

Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Erik Kristiansson, Kevin D. Hyde, Kessy Abarenkov, 2013, 1302.3244.

Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.

Erik Kristiansson, Roger Karlsson, Fredrik Boulund, 2015, Systematic and applied microbiology.

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity.

Erik Kristiansson, Martin Ryberg, R Henrik Nilsson, 2009, The New phytologist.

Top 50 most wanted fungi

R. Henrik Nilsson, Erik Kristiansson, Kessy Abarenkov, 2016 .

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

Erik Kristiansson, Johan Bengtsson-Palme, Jerker Fick, 2014, Front. Microbiol..

Sensitive and robust gene expression changes in fish exposed to estrogen – a microarray approach

Erik Kristiansson, Olle Nerman, Lina Gunnarsson, 2007, BMC Genomics.

HirBin: high-resolution identification of differentially abundant functions in metagenomes

Erik Kristiansson, Tobias Österlund, Viktor Jonsson, 2017, BMC Genomics.

Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

R. Henrik Nilsson, Erik Kristiansson, Nils Hallenberg, 2008, Evolutionary bioinformatics online.

The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents

Erik Kristiansson, Mikael Huss, Sanela Kjellqvist, 2015, Antimicrobial Agents and Chemotherapy.

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

R. Henrik Nilsson, Erik Kristiansson, Zheng Wang, 2013 .

Computational and Statistical Considerations in the Analysis of Metagenomic Data

Erik Kristiansson, Mariana Buongermino Pereira, Fredrik Boulund, 2018 .

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

R. Henrik Nilsson, Erik Kristiansson, Kessy Abarenkov, 2010 .

Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota)

Erik Kristiansson, Martin Ryberg, Mats Töpel, 2008, BMC Evolutionary Biology.

Evolutionary conservation of human drug targets in organisms used for environmental risk assessments.

Erik Kristiansson, Alexandra Jauhiainen, Olle Nerman, 2008, Environmental science & technology.

Comparison of four DNA extraction methods for comprehensive assessment of 16S rRNA bacterial diversity in marine biofilms using high-throughput sequencing

Erik Kristiansson, Thomas Backhaus, Lucas Sinclair, 2017, FEMS microbiology letters.