V.S. Batista

发表

MptpA kinetics enhanced by allosteric control of an active conformation.

F. Maschietto, J. Patrick Loria, B. Allen, 2022, Journal of molecular biology.

Identification and mechanistic basis of non-ACE2 blocking neutralizing antibodies from COVID-19 patients with deep RNA sequencing and molecular dynamics simulations

M. Levy, G. Nau, W. Fairbrother, 2022, bioRxiv.

Structural Insights into Binding of Remdesivir Triphosphate within the Replication–Transcription Complex of SARS-CoV-2

Jimin Wang, George P. Lisi, W. Konigsberg, 2022, Biochemistry.

How to correct relative voxel scale factors for calculations of vector-difference Fourier maps in cryo-EM

George P. Lisi, Shenping Wu, G. Brudvig, 2022, Journal of structural biology.

Boosting quantum amplitude exponentially in variational quantum algorithms

A. Aspuru‐Guzik, Micheline B Soley, T. Kyaw, 2022, Quantum Science and Technology.

Tools for analyzing protonation states and for tracing proton transfer pathways with examples from the Rb. sphaeroides photosynthetic reaction centers

M. Gunner, J. Mao, Umesh Khaniya, 2022, Photosynthesis Research.

Structural Basis for Reduced Dynamics of Three Engineered HNH Endonuclease Lys-to-Ala Mutants for the Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-Associated 9 (CRISPR/Cas9) Enzyme.

Jimin Wang, P. Arantes, G. Palermo, 2022, Biochemistry.

Insights into Binding of Single-Stranded Viral RNA Template to the Replication–Transcription Complex of SARS-CoV-2 for the Priming Reaction from Molecular Dynamics Simulations

Jimin Wang, George P. Lisi, W. Konigsberg, 2022, Biochemistry.

Enhanced Specificity Mutations Perturb Allosteric Signaling in 2 CRISPR-Cas 9 3

Łukasz Nierzwicki, P. Arantes, G. Palermo, 2022 .

Translocation pause of remdesivir-containing primer/template RNA duplex within SARS-CoV-2’s RNA polymerase complexes

Jimin Wang, V.S. Batista, Yuanjun Shi, 2022, Frontiers in Molecular Biosciences.

Twisting and swiveling domain motions in Cas9 to recognize target DNA duplexes, make double-strand breaks, and release cleaved duplexes

Jimin Wang, P. Arantes, G. Palermo, 2023, Frontiers in Molecular Biosciences.

A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks

N. Malvankar, Subhajyoti Chaudhuri, S. Yalcin, 2022, Science advances.

Valproate-coenzyme A conjugate blocks opening of receptor binding domains in the spike trimer of SARS-CoV-2 through an allosteric mechanism

Jimin Wang, George P. Lisi, E. Lolis, 2023, Computational and Structural Biotechnology Journal.

Quantum Convolutional Neural Networks for Multi-Channel Supervised Learning

V.S. Batista, Gregory W. Kyro, Anthony M. Smaldone, 2023, 2305.18961.

Mapping N- to C-terminal allosteric coupling through disruption of a putative CD74 activation site in D-dopachrome tautomerase

V. Bhandari, George P. Lisi, E. Lolis, 2023, The Journal of biological chemistry.

Nanosecond Dynamics Regulate the MIF-Induced Activity of CD74.

L. Leng, R. Bucala, V. Bhandari, 2018, Angewandte Chemie.

MDiGest: A Python package for describing allostery from molecular dynamics simulations

F. Maschietto, B. Allen, V.S. Batista, 2023, The Journal of chemical physics.

The allosteric impact of the variable insert loop in Vaccinia H1-related (VHR) phosphatase.

J. P. Loria, V. Batista, Victor Beaumont, 2020, Biochemistry.

Characterization of Protein Tyrosine Phosphatase 1B Inhibition by Chlorogenic Acid and Cichoric Acid.

Heidi P. Hendrickson, J. P. Loria, I. Rivalta, 2017, Biochemistry.

Protospacer Adjacent Motif-Induced Allostery Activates CRISPR-Cas9

J Andrew McCammon, Giulia Palermo, Victor S Batista, 2017, Journal of the American Chemical Society.

Allosteric Communication Disrupted by a Small Molecule Binding to the Imidazole Glycerol Phosphate Synthase Protein-Protein Interface.

Victor S Batista, Gregory A Manley, J Patrick Loria, 2016, Biochemistry.

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

J Andrew McCammon, Giulia Palermo, Victor S Batista, 2018, Quarterly Reviews of Biophysics.

Reengineering rate-limiting, millisecond enzyme motions by introduction of an unnatural amino acid.

J. P. Loria, I. Rivalta, V. Batista, 2011, Biophysical journal.

Characterization of Protein Tyrosine Phosphatase 1B Inhibition by Chlorogenic Acid and Cichoric Acid.

Heidi P. Hendrickson, J. P. Loria, I. Rivalta, 2017, Biochemistry.

Distinct Allosteric Pathways in Imidazole Glycerol Phosphate Synthase from Yeast and Bacteria.

I. Rivalta, F. Maschietto, Aria Gheeraert, 2021, Biophysical journal.

Quantum convolutional neural networks for multi-channel supervised learning

V.S. Batista, Gregory W. Kyro, Anthony M. Smaldone, 2023, Quantum Machine Intelligence.

Molecular mechanism of activation of human musk receptors OR5AN1 and OR1A1 by (R)-muscone and diverse other musk-smelling compounds

Rodrigo A. Cormanich, H. Matsunami, Hanyi Zhuang, 2018, Proceedings of the National Academy of Sciences.

Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain

Clarisse G. Ricci, J. Doudna, M. Jinek, 2018, Quarterly Reviews of Biophysics.