Hanno Steen

发表

mz5: Space- and Time-efficient Storage of Mass Spectrometry Data Sets*

Mathias Wilhelm, Marc Kirchner, Judith A J Steen, 2011, Molecular & Cellular Proteomics.

Computational protein profile similarity screening for quantitative mass spectrometry experiments

Ullrich Köthe, Bernhard Y. Renard, Hanno Steen, 2010, Bioinform..

FLEXIQuant-LF to quantify protein modification extent in label-free proteomics data

Hanno Steen, Christoph N Schlaffner, Konstantin Kahnert, 2020, eLife.

PIQED: Automated Identification And Quantification Of Protein Modifications From DIA-MS Data

Hanno Steen, Birgit Schilling, Bradford W. Gibson, 2017 .

Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics.

Hanno Steen, Fred A Hamprecht, Bjoern H Menze, 2008, Journal of proteome research.

A Non-parametric Cutout Index for Robust Evaluation of Identified Proteins*

Oliver Serang, Hanno Steen, Joao Paulo, 2013, Molecular & Cellular Proteomics.

FLEXIQuant-LF: Robust Regression to Quantify Protein Modification Extent in Label-Free Proteomics Data

Bernhard Y. Renard, Hanno Steen, Konstantin Kahnert, 2020, bioRxiv.

PIQED: automated identification and quantification of protein modifications from DIA-MS data

Hanno Steen, Alexey I Nesvizhskii, Birgit Schilling, 2017, Nature Methods.

A Practical Guide to the FLEXIQuant Method

Marc Kirchner, Hanno Steen, Sasha Singh, 2012, Quantitative Methods in Proteomics.

MGFp: an open Mascot Generic Format parser library implementation.

Judith A J Steen, Hanno Steen, Fred A Hamprecht, 2010, Journal of proteome research.

Non-linear classification for on-the-fly fractional mass filtering and targeted precursor fragmentation in mass spectrometry experiments

Hanno Steen, Marc Kirchner, Wiebke Timm, 2010, Bioinform..

When less can yield more – Computational preprocessing of MS/MS spectra for peptide identification

Judith A J Steen, Hanno Steen, Juri Rappsilber, 2009, Proteomics.

NITPICK: peak identification for mass spectrometry data

Bernhard Y. Renard, Hanno Steen, Fred A. Hamprecht, 2008, BMC Bioinformatics.

Mass Spectrometry-based Quantitative Proteomic Profiling of Human Pancreatic and Hepatic Stellate Cell Lines

Joao A. Paulo, Hanno Steen, Peter A. Banks, 2013, Genom. Proteom. Bioinform..

amsrpm: Robust Point Matching for Retention Time Aligment of LC/MS Data with R

Hanno Steen, Fred A. Hamprecht, Marc Kirchner, 2007 .

libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data

Hanno Steen, Marc Kirchner, Judith A. J. Steen, 2011, Bioinform..

Development of human protein reference database as an initial platform for approaching systems biology in humans.

Hanno Steen, Jonathan Pevsner, Minal Menezes, 2003, Genome research.

Deuteration distribution estimation with improved sequence coverage for HX/MS experiments

Ullrich Köthe, Bernhard Y. Renard, Hanno Steen, 2010, Bioinform..

FLEXITau: Quantifying Post-translational Modifications of Tau Protein in Vitro and in Human Disease.

Hanno Steen, Jan Muntel, Judith A Steen, 2016, Analytical chemistry.

Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome.

Hanno Steen, Matthias Mann, Ole N Jensen, 2002, Trends in biotechnology.

FLEXIQinase, a mass spectrometry-based assay, to unveil multi-kinase mechanisms

Hanno Steen, Judith A. Steen, Azad Bonni, 2012, Nature Methods.

Proteome Scale Characterization of Human S-Acylated Proteins in Lipid Raft-enriched and Non-raft Membranes*

Hanno Steen, Marc Kirchner, Wei Yang, 2009, Molecular & Cellular Proteomics.

Proteome of human perilymph.

Hanno Steen, Andrew C Lysaght, Konstantina M Stankovic, 2011, Journal of proteome research.

Comparative analysis of Erk phosphorylation suggests a mixed strategy for measuring phospho-form distributions

Hanno Steen, Jeremy Gunawardena, Isabelle Landrieu, 2011, Molecular systems biology.

Phosphorylation Analysis by Mass Spectrometry

Hanno Steen, John Rush, Marc W Kirschner, 2006, Molecular & Cellular Proteomics.

Purification of Active TFIID from Saccharomyces cerevisiae

Hanno Steen, Steven P. Gygi, S. Gygi, 2004, Journal of Biological Chemistry.

Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis

Hanno Steen, John Quackenbush, John Platig, 2019, bioRxiv.

Protein sulfation analysis--A primer.

Hanno Steen, Flavio Monigatti, H. Steen, 2006, Biochimica et biophysica acta.

FLEXIQuant: a novel tool for the absolute quantification of proteins, and the simultaneous identification and quantification of potentially modified peptides.

Hanno Steen, Marc W Kirschner, Michael Springer, 2009, Journal of proteome research.

SweetSEQer, Simple de Novo Filtering and Annotation of Glycoconjugate Mass Spectra

Hanno Steen, Jan Muntel, Judith A Steen, 2013, Molecular & Cellular Proteomics.

Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: A quantitative proteomic analysis

Hanno Steen, Marc Kirchner, Marc W. Kirschner, 2008, Proceedings of the National Academy of Sciences.

Abundance-based Classifier for the Prediction of Mass Spectrometric Peptide Detectability Upon Enrichment (PPA)*

Hanno Steen, Jan Muntel, Greg Foley, 2014, Molecular & Cellular Proteomics.

Analysis of protein-nucleic acid interactions by photochemical cross-linking and mass spectrometry.

Hanno Steen, Ole Nørregaard Jensen, H. Steen, 2002, Mass spectrometry reviews.

Proteomics goes quantitative: measuring protein abundance.

Hanno Steen, Akhilesh Pandey, A. Pandey, 2002, Trends in biotechnology.

Tiki1 Is Required for Head Formation via Wnt Cleavage-Oxidation and Inactivation

Chika Yokota, Hanno Steen, Mingzi M. Zhang, 2012, Cell.

A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation.

Hanno Steen, Ofer Levy, Gregory J Beilman, 2018, Journal of proteome research.

Overcoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS)*

Bernhard Y. Renard, Hanno Steen, Fred A. Hamprecht, 2012, Molecular & Cellular Proteomics.

A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis.

Hanno Steen, Jiaxu Li, H. Steen, 2009, Journal of proteomics.

Proteomic approaches to the analysis of multiprotein signaling complexes

Hanno Steen, Wei Yang, H. Steen, 2008, Proteomics.

Post‐translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding

Hanno Steen, Jeremy Gunawardena, Sudhakaran Prabakaran, 2012, Wiley interdisciplinary reviews. Systems biology and medicine.

Tyrosine Phosphorylation Mapping of the Epidermal Growth Factor Receptor Signaling Pathway*

Hanno Steen, Bernhard Kuster, Matthias Mann, 2002, The Journal of Biological Chemistry.

Cytosolic 5′‐nucleotidase 1A autoimmunity in sporadic inclusion body myositis

Hanno Steen, S. Elledge, S. Kong, 2013, Annals of neurology.

Post-translational modifications of pancreatic fluid proteins collected via the endoscopic pancreatic function test (ePFT).

Hanno Steen, Joao A. Paulo, Peter A. Banks, 2013, Journal of proteomics.

Proteomic analysis (GeLC-MS/MS) of ePFT-collected pancreatic fluid in chronic pancreatitis.

Hanno Steen, Joao A Paulo, Linda S. Lee, 2012, Journal of proteome research.

Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer.

Hanno Steen, Jayoung Kim, Wei Yang, 2010, Journal of proteome research.

Analysis of bromotryptophan and hydroxyproline modifications by high-resolution, high-accuracy precursor ion scanning utilizing fragment ions with mass-deficient mass tags.

Hanno Steen, Matthias Mann, M. Mann, 2002, Analytical chemistry.

Protein Profiling with Cleavable Isotope-coded Affinity Tag (cICAT) Reagents

Hanno Steen, Steven P Gygi, Jiaxu Li, 2003, Molecular & Cellular Proteomics.

Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.

Hanno Steen, Lukas Reiter, Alex Kentsis, 2015, Journal of proteome research.

Estimating the confidence of peptide identifications without decoy databases.

Hanno Steen, Fred A Hamprecht, Marc Kirchner, 2010, Analytical chemistry.

Design and validation of a high-throughput matrix-assisted laser desorption ionization time-of-flight mass spectrometry method for quantification of hepcidin in human plasma.

Hanno Steen, Marc Kirchner, Leslie A Kalish, 2011, Analytical chemistry.

Proteomic analysis of palmitoylated platelet proteins.

Hanno Steen, Robert Flaumenhaft, Wei Yang, 2010, Blood.

Dynamic molecular changes during the first week of human life follow a robust developmental trajectory

Ryan R Brinkman, Hanno Steen, Cai Bing, 2019, Nature Communications.

A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode

Hanno Steen, Matthias Mann, M. Mann, 2002, Journal of the American Society for Mass Spectrometry.

Optimization of cell lysis and protein digestion protocols for the analysis of HeLa S3 cells by LC‐MS/MS

Hanno Steen, H. Steen, Dominic Winter, 2011, Proteomics.