Jian Liu

发表

EGR: Equivariant Graph Refinement and Assessment of 3D Protein Complex Structures

Jianlin Cheng, Tianqi Wu, Alex Morehead, 2022, ArXiv.

DProQ: A Gated-Graph Transformer for Protein Complex Structure Assessment

Jianlin Cheng, Alex Morehead, Xiao Chen, 2022, ArXiv.

Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14

Jianlin Cheng, Jie Hou, Tianqi Wu, 2021, bioRxiv.

Multi-head attention-based U-Nets for predicting protein domain boundaries using 1D sequence features and 2D distance maps

Jianlin Cheng, Zhiye Guo, S. Mahmud, 2022, BMC Bioinformatics.

Curation of the Deep Green list of unannotated green lineage proteins to enable structural and functional characterization

Peter C. St. John, A. Nag, Jianlin Cheng, 2022, bioRxiv.

Prediction of inter-chain distance maps of protein complexes with 2D attention-based deep neural networks

J. Skolnick, Jianlin Cheng, Zhiye Guo, 2022, bioRxiv.

Improving deep learning-based protein distance prediction in CASP14

Jianlin Cheng, Tianqi Wu, Zhiye Guo, 2021, bioRxiv.

A Gated Graph Transformer for Protein Complex Structure Quality Assessment and its Performance in CASP15

Jianlin Cheng, Alex Morehead, Xiao Chen, 2023, bioRxiv.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Jeffrey J. Gray, Panagiotis I. Koukos, Johnathan D. Guest, 2021, Proteins.

Diffusion Models in Bioinformatics: A New Wave of Deep Learning Revolution in Action

Jianlin Cheng, Duolin Wang, Zhiye Guo, 2023, ArXiv.

A gated graph transformer for protein complex structure quality assessment and its performance in CASP15

Jianlin Cheng, Alex Morehead, Xiao Chen, 2023, bioRxiv.

Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14

Jianlin Cheng, Jie Hou, Tianqi Wu, 2021, Scientific Reports.

Autoencoder-based drug-target interaction prediction by preserving the consistency of chemical properties and functions of drugs

Yangkun Cao, Chang Sun, Jian Liu, 2021, Bioinform..

Drug-Protein interaction prediction by correcting the effect of incomplete information in heterogeneous information

Jian Liu, Jinmao Wei, Chang Sun, 2022, Bioinform..

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins

Silvio C. E. Tosatto, M. Y. Lobanov, Md. Wasi Ul Kabir, 2023, Nucleic Acids Res..

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Johnathan D. Guest, Adam K. Sieradzan, Charles W Christoffer, 2023, Proteins.

Improving AlphaFold2-based protein tertiary structure prediction with MULTICOM in CASP15

Jianlin Cheng, Chen Chen, Tianqi Wu, 2023, bioRxiv.

Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15

Tianqi Wu, Zhiye Guo, Chen Chen, 2023, Communications biology.

Diffusion models in bioinformatics and computational biology.

Duolin Wang, Zhiye Guo, Jian Liu, 2023, Nature reviews bioengineering.

Deep Learning for Protein-Ligand Docking: Are We There Yet?

Alex Morehead, Jian Liu, Nabin Giri, 2024, ArXiv.

Enhancing AlphaFold-Multimer-based Protein Complex Structure Prediction with MULTICOM in CASP15

Jianlin Cheng, Chen Chen, Tianqi Wu, 2023, bioRxiv.