Rodrigo Lopez

发表

The EBI SRS server-new features

Rolf Apweiler, Evgeny M. Zdobnov, Rodrigo Lopez, 2002, Bioinform..

Clustal W and Clustal X version 2.0

Rodrigo Lopez, Julie Dawn Thompson, Desmond G. Higgins, 2007, Bioinform..

Multiple sequence alignment with the Clustal series of programs

Rodrigo Lopez, Hideaki Sugawara, Desmond G. Higgins, 2003, Nucleic Acids Res..

Petabyte-scale innovations at the European Nucleotide Archive

Rodrigo Lopez, Guy Cochrane, Richard Gibson, 2008, Nucleic Acids Res..

Data curation + process curation=data integration + science

Carole A. Goble, Robert Stevens, Rodrigo Lopez, 2008, Briefings Bioinform..

Model Based Optimal Sensor Network Design for Condition Monitoring in an IGCC Plant

Dan Dai, Rodrigo Lopez, Aditya Kumar, 2012 .

The European Bioinformatics Institute web site: a new view

Rodrigo Lopez, Stephen Robinson, Rob Harper, 2003, Bioinform..

The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI

Rodrigo Lopez, Nicola Buso, Hamish McWilliam, 2015, Nucleic Acids Res..

HMMER web server: 2018 update

Robert D. Finn, Sean R. Eddy, Rodrigo Lopez, 2018, Nucleic Acids Res..

InterPro : An integrated documentation resource for protein families , domains and functional sites The InterPro Consortium :

Alex Bateman, Rolf Apweiler, Beate Marx, 2005 .

EMBL Nucleotide Sequence Database in 2006

Dan Wu, Vincent Lombard, Rolf Apweiler, 2006, Nucleic Acids Res..

Facing growth in the European Nucleotide Archive

Xiu Lin, Rodrigo Lopez, Guy Cochrane, 2012, Nucleic Acids Res..

InterPro in 2017—beyond protein family and domain annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Huaiyu Mi, 2016, Nucleic Acids Res..

Fast and efficient searching of biological data resources - using EB-eye

Rodrigo Lopez, Hamish McWilliam, Franck Valentin, 2010, Briefings Bioinform..

The EBI search engine: EBI search as a service—making biological data accessible for all

Rodrigo Lopez, Nicola Buso, Silvano Squizzato, 2017, Nucleic Acids Res..

Bioinformatics: Using the Molecular Biology Data

Rolf Apweiler, Rodrigo Lopez, Thure Etzold, 2007, Essentials of Genomics and Bioinformatics.

Non-redundant patent sequence databases with value-added annotations at two levels

Rodrigo Lopez, Hamish McWilliam, Weizhong Li, 2009, Nucleic Acids Res..

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

Rodrigo Lopez, Toby J. Gibson, Alberto Labarga, 2008, BMC Bioinformatics.

Structural Analysis in Continuum Media Using Cellular Automata

Rodrigo Lopez, Andres Tovar, Carlos A. Narvaez, 2006 .

The EBI enzyme portal

Christoph Steinbeck, Maria Jesus Martin, Claire O'Donovan, 2012, Nucleic Acids Res..

The EMBL Nucleotide Sequence Database

Rodrigo Lopez, Peter Sterk, Guenter Stoesser, 1999, Nucleic Acids Res..

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

Steve Pettifer, Dan M. Bolser, Rodrigo Lopez, 2013, Bioinform..

Improvements to services at the European Nucleotide Archive

Ying Cheng, Rodrigo Lopez, Guy Cochrane, 2009, Nucleic Acids Res..

InterPro: the integrative protein signature database

Robert D. Finn, Cathy H. Wu, Alex Bateman, 2008, Nucleic Acids Res..

The European Bioinformatics Institute in 2018: tools, infrastructure and training

Rolf Apweiler, Rodrigo Lopez, Guy Cochrane, 2018, Nucleic Acids Res..

Public services from the

Rodrigo Lopez, Asif Kibria, Nicola Harte, 2003 .

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

Emily Dimmer, Rolf Apweiler, Rodrigo Lopez, 2004, Nucleic Acids Res..

InterProScan: protein domains identifier

Rolf Apweiler, Nicola J. Mulder, Rodrigo Lopez, 2005, Nucleic Acids Res..

IPD—the Immuno Polymorphism Database

James Robinson, Rodrigo Lopez, Steven G. E. Marsh, 2012, Nucleic Acids Res..

InterPro, progress and status in 2005

Cathy H. Wu, Alex Bateman, Rolf Apweiler, 2004, Nucleic Acids Res..

IPD—the Immuno Polymorphism Database

James Robinson, Rodrigo Lopez, Steven G. E. Marsh, 2004, Nucleic acids research.

The EMBL Nucleotide Sequence Database

Vincent Lombard, Rodrigo Lopez, Helen E. Parkinson, 2002, Nucleic Acids Res..

Assembly information services in the European Nucleotide Archive

Rodrigo Lopez, Guy Cochrane, Richard Gibson, 2013, Nucleic Acids Res..

New developments in the InterPro database

Robert D. Finn, Robert Petryszak, Cathy H. Wu, 2007, Nucleic Acids Res..

The IMGT/HLA database

James Robinson, Rodrigo Lopez, Steven G. E. Marsh, 2008, Nucleic Acids Res..

Combined holt-winters and GA trained ANN approach for sensor validation and reconstruction: Application to water demand flowmeters

Rodrigo Lopez, Vicenc Puig, Juan J. Flores, 2016, 2016 3rd Conference on Control and Fault-Tolerant Systems (SysTol).

Analysis Tool Web Services from the EMBL-EBI

Rodrigo Lopez, Nicola Buso, Hamish McWilliam, 2013, Nucleic Acids Res..

The EMBL-EBI bioinformatics web and programmatic tools framework

Rodrigo Lopez, Nicola Buso, Hamish McWilliam, 2015, Nucleic Acids Res..

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers

Celia W. G. van Gelder, Rafael C. Jimenez, Marie-Claude Blatter, 2011, Briefings Bioinform..

Web Services at the European Bioinformatics Institute

Rodrigo Lopez, Mikael Andersson, Franck Valentin, 2007, Nucleic Acids Res..

The European Bioinformatics Institute's data resources

Maria Jesus Martin, Claire O'Donovan, Rolf Apweiler, 2003, Nucleic Acids Res..

PSI-Search: iterative HOE-reduced profile SSEARCH searching

Rodrigo Lopez, William R. Pearson, Hamish McWilliam, 2012, Bioinform..

Data curation 1 process curation^data integration 1 science

Carole Goble, Rodrigo Lopez, Duncan Hull, 2008 .

ASSPA. ASSISTANT FOR FLIGHT TEST EXECUTION

Rodrigo Lopez, Pedro Rubio, 2017 .

Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services

Andrew Cowley, Rodrigo Lopez, Hamish McWilliam, 2014, Current protocols in bioinformatics.

Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services

Fábio Madeira, Rodrigo Lopez, Joon Lee, 2014, Current protocols in bioinformatics.

The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics

Christoph Steinbeck, Rodrigo Lopez, Hong Cao, 2013, BMC Bioinformatics.

The EBI SRS Server: Recent Developments

Rolf Apweiler, Evgeny M. Zdobnov, Rodrigo Lopez, 2002, German Conference on Bioinformatics.

Web services at the European Bioinformatics Institute-2009

Rodrigo Lopez, Hamish McWilliam, Franck Valentin, 2009, Nucleic Acids Res..

UniProt: the Universal Protein knowledgebase

Cathy H. Wu, Maria Jesus Martin, Claire O'Donovan, 2004, Nucleic Acids Res..

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

Robert Petryszak, Juan Antonio Vizcaíno, Frank Oliver Glöckner, 2020, Bioinformatics.

Programmatic access to bioinformatics tools from EMBL-EBI update: 2017

Rodrigo Lopez, Joon Lee, Anna Foix, 2017, Nucleic Acids Res..

UniProt archive

Rolf Apweiler, Rodrigo Lopez, Rasko Leinonen, 2004, Bioinform..

WU-Blast2 server at the European Bioinformatics Institute

Rodrigo Lopez, Stephen Robinson, Asif Kibria, 2003, Nucleic Acids Res..

EMBL Nucleotide Sequence Database: developments in 2005

Dan Wu, Vincent Lombard, Rolf Apweiler, 2005, Nucleic Acids Res..

The EMBL Nucleotide Sequence Database: major new developments

Vincent Lombard, Rodrigo Lopez, Peter Stoehr, 2003, Nucleic Acids Res..

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites

Alex Bateman, Rolf Apweiler, Henning Hermjakob, 2002, Briefings Bioinform..

SOAP-based services provided by the European Bioinformatics Institute

Sameer Velankar, Rodrigo Lopez, Peter Stoehr, 2005, Nucleic Acids Res..

The EMBL Nucleotide Sequence Database

Vincent Lombard, Rodrigo Lopez, Peter Stoehr, 2002, Nucleic Acids Res..

Topology Synthesis of Compliant Mechanisms using Cellular Automata

Rodrigo Lopez, Andres Tovar, Carlos A. Narvaez, 2008 .

The IMGT/HLA database

James Robinson, Rodrigo Lopez, Steven G. E. Marsh, 2013, Nucleic Acids Res..

Public web-based services from the European Bioinformatics Institute

Rodrigo Lopez, Stephen Robinson, Pravin Patel, 2004, Nucleic Acids Res..

A new bioinformatics analysis tools framework at EMBL–EBI

Rodrigo Lopez, Hamish McWilliam, Franck Valentin, 2010, Nucleic Acids Res..

Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database

Dan Wu, Rolf Apweiler, Rodrigo Lopez, 2007, Nucleic Acids Res..

Advanced Monitoring Techniques

Rodrigo Lopez, Pedro Rubio, Moises Gonzalez, 2014 .

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Robert D. Finn, 2018, Nucleic Acids Res..

Public services from the European Bioinformatics Institute

Rodrigo Lopez, Asif Kibria, Nicola Harte, 2003, Briefings Bioinform..

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Alex Bateman, Rolf Apweiler, Beate Marx, 2001, Nucleic Acids Res..

The InterPro Database, 2003 brings increased coverage and new features

Alex Bateman, Rolf Apweiler, Nicola J. Mulder, 2003, Nucleic Acids Res..

BioCatalogue: a universal catalogue of web services for the life sciences

Carole A. Goble, Steve Pettifer, Robert Stevens, 2010, Nucleic Acids Res..

Nonlinear Programming Sensitivity Based Methods for Constrained State Estimation

Rodrigo Lopez, 2011 .

InterPro in 2011: new developments in the family and domain prediction database

Robert D. Finn, Matthew Fraser, Cathy H. Wu, 2011, Nucleic acids research.

The Annotation-enriched non-redundant patent sequence databases

Rodrigo Lopez, Hamish McWilliam, Weizhong Li, 2013, Database J. Biol. Databases Curation.

The European Nucleotide Archive in 2020

Rodrigo Lopez, Guy Cochrane, Tony Burdett, 2020, Nucleic Acids Res..

UniProt: the universal protein knowledgebase in 2021

Peter B. McGarvey, Cathy H. Wu, Alex Bateman, 2020, Nucleic Acids Res..

The bio.tools registry of software tools and data resources for the life sciences

Hedi Peterson, Tomáš Raček, Radka Svobodová Vařeková, 2019, Genome Biology.

Query-seeded iterative sequence similarity searching improves selectivity 5–20-fold

Rodrigo Lopez, William R. Pearson, W. Pearson, 2016, Nucleic acids research.