Han Yuan

发表

The complete cell atlas of an aging multicellular organism

David R. Kelley, David G Hendrickson, C. Kenyon, 2022, bioRxiv.

Novel insights from a multiomics dissection of the Hayflick limit

David R. Kelley, David G Hendrickson, D. Botstein, 2022, eLife.

BindVAE: Dirichlet variational autoencoders for de novo motif discovery from accessible chromatin

C. Leslie, J. Ferres, Meghana Kshirsagar, 2021, Genome Biology.

BindSpace decodes transcription factor binding signals by large-scale sequence embedding

Han Yuan, Christina S. Leslie, Meghana Kshirsagar, 2019, Nature Methods.

BindSpace: decoding transcription factor binding signals by large-scale joint embedding

Han Yuan, Meghana Kshirsagar, Yuheng Lu, 2018, bioRxiv.

Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites and Chromatin

David R. Kelley, David G Hendrickson, D. Botstein, 2021, bioRxiv.

scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

David R. Kelley, Han Yuan, 2021, Nature Methods.

Author Correction: scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

David R. Kelley, Han Yuan, 2022, Nature Methods.

Individual cell types in C. elegans age differently and activate distinct cell-protective responses.

David R. Kelley, David G Hendrickson, C. Kenyon, 2023, Cell reports.

Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation

David R. Kelley, Han Yuan, Johannes Linder, 2023, bioRxiv.