Dohoon Lee

发表

Learning Cell-Type-Specific Gene Regulation Mechanisms by Multi-Attention Based Deep Learning With Regulatory Latent Space

Sangseon Lee, Sun Kim, Minji Kang, 2020, Frontiers in Genetics.

Network-Based Metric Space for Phenotypic Stratification of Samples Using Transcriptome Profiles

Sangseon Lee, Sun Kim, Inyoung Sung, 2021 .

Risk Stratification for Breast Cancer Patient by Simultaneous Learning of Molecular Subtype and Survival Outcome Using Genetic Algorithm-Based Gene Set Selection

Sun Kim, Sangseon Lee, Inyoung Sung, 2022, Cancers.

Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments

Sun Kim, Dohoon Lee, Bonil Koo, 2022, bioRxiv.

SPGP: Structure Prototype Guided Graph Pooling

Sun Kim, Sangseon Lee, Dohoon Lee, 2022, 2209.07817.

COCAW: A Genome-wide Pattern Search System for Designing Microbial Probes

Kiejung Park, Dohoon Lee, SeungHeui Ryu, 2009 .

Single-cell transcriptome analyses reveal distinct gene expression signatures of severe COVID-19 in the presence of clonal hematopoiesis

Sun Kim, Inkyung Jung, Y. Koh, 2022, Experimental & Molecular Medicine.

Learning the histone codes with large genomic windows and three-dimensional chromatin interactions using transformer

Sun Kim, Dohoon Lee, Jeewon Yang, 2022, Nature Communications.

BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud

Heejoon Chae, Sungjoon Park, Sun Kim, 2021, Bioinform..

DRIM: A Web-Based System for Investigating Drug Response at the Molecular Level by Condition-Specific Multi-Omics Data Integration

Kyuri Jo, Inuk Jung, Sangseon Lee, 2020, Frontiers in Genetics.

Inferring transcriptomic cell states and transitions only from time series transcriptome data

Sun Kim, Inyoung Sung, Kyuri Jo, 2021, Scientific Reports.

Knowledge-guided artificial intelligence technologies for decoding complex multiomics interactions in cells

Dohoon Lee, S. Kim, 2021, Clinical and experimental pediatrics.

AMLs harboring DNMT3A-destabilizing variants show increased intratumor DNA methylation heterogeneity at bivalent chromatin domains

Ji-Joon Song, Junshik Hong, Sun Kim, 2023, bioRxiv.

Towards multi-omics characterization of tumor heterogeneity: a comprehensive review of statistical and machine learning approaches

Sun Kim, Youngjune Park, Dohoon Lee, 2020, Briefings Bioinform..

Clinical and immunological signatures of severe COVID-19 in previously healthy patients with clonal hematopoiesis

Hogune Im, S. Yoon, Inkyung Jung, 2021, bioRxiv.

Characterization of radiation-resistance mechanism in Spirosoma montaniterrae DY10T in terms of transcriptional regulatory system

Sun Kim, M. Kim, Dabin Jeong, 2023, Scientific Reports.

Sparse Structure Learning via Graph Neural Networks for Inductive Document Classification

Sun Kim, Sangseon Lee, Dohoon Lee, 2021, AAAI.

Deep learning-based survival prediction using DNA methylation-derived 3D genomic information

Sun Kim, Dohoon Lee, Bonil Koo, 2023, bioRxiv.

Learning the histone codes of gene regulation with large genomic windows and three-dimensional chromatin interactions using transformer

Sun Kim, Dohoon Lee, Jeewon Yang, 2021, bioRxiv.

Evaluation and optimization of sequence-based gene regulatory deep learning models

Carl G. de Boer, A. Regev, Payman Yadollahpour, 2024, bioRxiv.

SPGP: Structure Prototype Guided Graph Pooling

Sun Kim, Sangseon Lee, Dohoon Lee, 2022, ArXiv.

Subnetwork representation learning for discovering network biomarkers in predicting lymph node metastasis in early oral cancer

Sangseon Lee, Minsu Kim, Sangsoo Lim, 2021, Scientific Reports.

Multi-layered knowledge graph neural network reveals pathway-level agreement of three breast cancer multi-gene assays.

Sangseon Lee, Joonhyeong Park, Dohoon Lee, 2024, Computational and structural biotechnology journal.

Unraveling the impact of lysosomal dysfunction on myeloproliferative neoplasm

Junshik Hong, Sheehyun Kim, Dong-Yeop Shin, 2024, Cancer medicine.