Hosein Toosi

发表

Using LICHeE and BAMSE for Reconstructing Cancer Phylogenetic Trees

I. Hajirasouliha, Camir Ricketts, Victoria Popic, 2018, Current protocols in bioinformatics.

Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

L. Kaczmarek, J. Lagergren, D. Nowis, 2022, bioRxiv.

Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues

Jeff E. Mold, J. Hartman, J. Lagergren, 2022, bioRxiv.

CopyMix: Mixture Model Based Single-Cell Clustering and Copy Number Profiling using Variational Inference

Jens Lagergren, Negar Safinianaini, Camila P. E. de Souza, 2020, bioRxiv.

Clonally heritable gene expression imparts a layer of diversity within cell types

Jeff E. Mold, R. Sandberg, J. Lagergren, 2022, bioRxiv.

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics

Jeff E. Mold, R. Sandberg, J. Hartman, 2023, Nature Communications.

PhylEx: Accurate reconstruction of clonal structure via integrated analysis of bulk DNA-seq and single cell RNA-seq data

Jeff E. Mold, R. Sandberg, J. Hartman, 2021, bioRxiv.

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue

Jeff E. Mold, J. Hartman, J. Lagergren, 2022, bioRxiv.

BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples

Ali Moeini, Iman Hajirasouliha, Hosein Toosi, 2019, BMC Bioinformatics.

Clonally heritable gene expression imparts a layer of diversity within cell types.

Jeff E. Mold, R. Sandberg, J. Lundeberg, 2024, Cell systems.

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics

Jeff E. Mold, J. Lagergren, J. Lundeberg, 2023, Science.