Thanh-Binh Nguyen

发表

Systematic evaluation of computational tools to predict the effects of mutations on protein stability in the absence of experimental structures

Qisheng Pan, D. Ascher, D. Pires, 2022, Briefings Bioinform..

kinCSM: Using graph‐based signatures to predict small molecule CDK2 inhibitors

Douglas E. V. Pires, Carlos H. M. Rodrigues, D. Ascher, 2022, Protein science : a publication of the Protein Society.

A bias of Asparagine to Lysine mutations in SARS-CoV-2 outside the receptor binding domain affects protein flexibility

M. Plebanski, J. Holien, Qisheng Pan, 2022, Frontiers in Immunology.

Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome.

P. Lockhart, I. Scheffer, H. Mefford, 2022, American journal of human genetics.

Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase

Carlos H. M. Rodrigues, D. Ascher, D. Pires, 2021, Computational and structural biotechnology journal.

Definition of the immune evasion-replication interface of rabies virus P protein

G. Moseley, D. Ascher, P. Gooley, 2021, PLoS pathogens.

SAP domain forms a flexible part of DNA aperture in Ku70/80

T. Blundell, R. Beckmann, D. Ascher, 2020, The FEBS journal.

ThermoMutDB: a thermodynamic database for missense mutations

Douglas E. V. Pires, Stephanie Portelli, David B. Ascher, 2020, Nucleic Acids Res..

Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins

Mallur S. Madhusudhan, Thanh Binh Nguyen, Kuan Pern Tan, 2013, Nucleic Acids Res..

mmCSM-NA: accurately predicting effects of single and multiple mutations on protein–nucleic acid binding affinity

D. Ascher, D. Pires, Yoochan Myung, 2021, NAR genomics and bioinformatics.

kinCSM: using graph-based signatures to predict small molecule CDK2 kinase inhibitors

Douglas E. V. Pires, Raghad Al-Jarf, David B. Ascher, 2021 .

LEGO-CSM: a tool for functional characterization of proteins

Douglas E. V. Pires, Carlos H. M. Rodrigues, D. Ascher, 2023, Bioinformatics.

Characterization on the oncogenic effect of the missense mutations of p53 via machine learning

Stephanie Portelli, Thanh-Binh Nguyen, Qisheng Pan, 2023, Briefings in bioinformatics.