Shanrong Zhao

发表

Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data

Mateusz Maciejewski, John Long, Jonathan R. Walsh, 2020, BMC Bioinformatics.

QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing

Chi Zhang, Wen He, Li Xi, 2017, BMC Bioinformatics.

Applications of machine learning in drug discovery and development

Bin Li, Anant Madabhushi, Dominic Clark, 2019, Nature Reviews Drug Discovery.

Bioinformatics for RNA‐Seq Data Analysis

Ying Zhang, Shanrong Zhao, Baohong Zhang, 2016 .

QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization.

Chi Zhang, Shanrong Zhao, Baohong Zhang, 2018, Methods in molecular biology.

Impact of Gene Annotation on RNA-seq Data Analysis

Shanrong Zhao, Baohong Zhang, 2016 .

Cloud Computing for Next‐Generation Sequencing Data Analysis

Chi Zhang, Shanrong Zhao, Baohong Zhang, 2017 .

canvasDesigner: a versatile interactive high-resolution scientific multi-panel visualization toolkit

Isaac Neuhaus, Shanrong Zhao, Baohong Zhang, 2018, Bioinform..

QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization

Shanrong Zhao, Baohong Zhang, Chi Zhang, 2017, bioRxiv.

canvasXpress: A versatile interactive high-resolution scientific multi-panel visualization toolkit

Shanrong Zhao, Baohong Zhang, Isaac M. Neuhaus, 2017, bioRxiv.

Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies

Lance Smith, Shanrong Zhao, Kurt Prenger, 2013, ISRN bioinformatics.

Cloud Computing - Architecture and Applications pdf

Jian Wang, Aleksandr Ometov, Sergey Andreev, 2017, ArXiv.

Knowledge-based protein structure prediction

Yun Tang, Kaixian Chen, Shanrong Zhao, 1996 .

Deep learning of representations for transcriptomics-based phenotype prediction

Mateusz Maciejewski, John Long, Jonathan R. Walsh, 2019, bioRxiv.

A germline knowledge based computational approach for determining antibody complementarity determining regions.

Shanrong Zhao, Shanrong Zhao, Jin Lu, 2010, Molecular immunology.

Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap

Jie Quan, Shanrong Zhao, Baohong Zhang, 2015, BMC Genomics.

Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion

Shanrong Zhao, Baohong Zhang, Ying Zhang, 2018, Scientific Reports.

High resolution molecular and histological analysis of renal disease progression in ZSF1 fa/faCP rats, a model of type 2 diabetic nephropathy

Shanrong Zhao, Baohong Zhang, Vuong Nguyen, 2017, PloS one.

Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?

Shanrong Zhao, Baohong Zhang, Shanrong Zhao, 2015, PloS one.

QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization

Jie Quan, Shanrong Zhao, Baohong Zhang, 2015, BMC Genomics.