Reagon Karki

发表

Data-Driven Modeling of Knowledge Assemblies in Understanding Comorbidity Between Type 2 Diabetes Mellitus and Alzheimer’s Disease

M. Hofmann-Apitius, Daniel Domingo-Fernándéz, S. Madan, 2020, Journal of Alzheimer's disease : JAD.

A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization

M. Peitsch, R. Eils, H. Fröhlich, 2021, Scientific Reports.

Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox

P. Gribbon, A. Zaliani, Yojana Gadiya, 2022, bioRxiv.

A Systems Biology Approach for Hypothesizing the Effect of Genetic Variants on Neuroimaging Features in Alzheimer’s Disease

Charles Tapley Hoyt, Sepehr Golriz Khatami, M. Hofmann-Apitius, 2021, Journal of Alzheimer's disease : JAD.

Deep learning for clustering of multivariate clinical patient trajectories with missing values

Johann de Jong, Mohammad Asif Emon, Ping Wu, 2019, GigaScience.

The COVID-19 PHARMACOME: Rational Selection of Drug Repurposing Candidates from Multimodal Knowledge Harmonization

Martin Hofmann-Apitius, Andrea Zaliani, Reagon Karki, 2020, bioRxiv.

Comprehensive Fragment Screening of the SARS‐CoV‐2 Proteome Explores Novel Chemical Space for Drug Development

D. Laurents, J. Hoch, K. Saxena, 2022, Angewandte Chemie.

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

Martin Hofmann-Apitius, Reagon Karki, Alpha Tom Kodamullil, 2020, bioRxiv.

Comorbidity Analysis between Alzheimer’s Disease and Type 2 Diabetes Mellitus (T2DM) Based on Shared Pathways and the Role of T2DM Drugs

Martin Hofmann-Apitius, Reagon Karki, Alpha Tom Kodamullil, 2017, Journal of Alzheimer's disease : JAD.

Using Drugs as Molecular Probes: A Computational Chemical Biology Approach in Neurodegenerative Diseases

Mohammad Asif Emon, Reagon Karki, Martin Hofmann-Apitius, 2016, Journal of Alzheimer's disease : JAD.

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL)

Juliane Fluck, Manuel C. Peitsch, Reagon Karki, 2016, Database J. Biol. Databases Curation.

Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models

M. Hofmann-Apitius, E. Younesi, S. Madan, 2017, Journal of Alzheimer's Disease.

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

Martin Hofmann-Apitius, Reagon Karki, Alpha Tom Kodamullil, 2020, bioRxiv.

Curating, collecting, and cataloguing global COVID-19 datasets for the aim of predicting personalized risk

Sepehr Golriz Khatami, M. Hofmann-Apitius, S. Gebel, 2021, medRxiv.

Realistic simulation of virtual multi-scale, multi-modal patient trajectories using Bayesian networks and sparse auto-encoders

Mohammad Asif Emon, H. Fröhlich, M. Hofmann-Apitius, 2020, Scientific Reports.

Quantifying mechanisms in neurodegenerative diseases (NDDs) using candidate mechanism perturbation amplitude (CMPA) algorithm

Martin Hofmann-Apitius, Reagon Karki, Alpha Tom Kodamullil, 2019, BMC Bioinformatics.

Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment

Mohammad Asif Emon, Martin Hofmann-Apitius, Reagon Karki, 2017, Bioinform..

Realistic simulation of virtual multi-scale, multi-modal patient trajectories using Bayesian networks and sparse auto-encoders

Mohammad Asif Emon, Meemansa Sood, Henri Vrooman, 2020, Scientific Reports.

Pharmacological Profiles of Neglected Tropical Disease Drugs

A. Zaliani, Yojana Gadiya, Reagon Karki, 2024, Artificial Intelligence in the Life Sciences.