Leonid A. Mirny

发表

Cooler: scalable storage for Hi-C data and other genomically-labeled arrays

Nezar Abdennur, Leonid A. Mirny, L. Mirny, 2019, bioRxiv.

International Conference in Systems Biology 2003 Extended Abstract September 2003 Computational analysis of metabolic modules and pathways in the E.coli metabolic network

Mikhail S. Gelfand, Leonid A. Mirny, Victor Spirin, 2003 .

CoC: a database of universally conserved residues in protein folds

Veronica Rotemberg, Eugene I. Shakhnovich, Leonid A. Mirny, 2005, Bioinform..

Intricate Knots in Proteins: Function and Evolution

Peter Virnau, Leonid A. Mirny, Mehran Kardar, 2006, PLoS Comput. Biol..

22.00J / 1.021J / 3.021J / 10.333J / 18.361J / 2.030J / HST.558 Introduction to Modeling and Simulation, Spring 2002

Martin Z. Bazant, Jacob K. White, Nicola Marzari, 2002 .

Monte Carlo modeling of epidemiological studies

A. I. Shlyakhter, Alexander Vlasov, Richard Wilson, 1996 .

Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization

Marc A. Martí-Renom, Leonid A. Mirny, L. Mirny, 2011, PLoS Comput. Biol..

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes

Mikhail S. Gelfand, Ekaterina Khrameeva, Leonid A. Mirny, 2016, J. Bioinform. Comput. Biol..

The 4D Nucleome Project

Peter J. Park, Sheng Zhong, Jay Shendure, 2017 .

Operating Regimes of Signaling Cycles: Statics, Dynamics, and Noise Filtering

George C. Verghese, Leonid A. Mirny, Carlos Gomez-Uribe, 2007, PLoS Comput. Biol..

mirnylab/cooler: v0.8.7

Hendrik Strobelt, Nils Gehlenborg, Peter Kerpedjiev, 2020 .

HiGlass: Web-based visual comparison and exploration of genome interaction maps

Peter J. Park, Hanspeter Pfister, Peter Kerpedjiev, 2017 .

Drift, draft, waves, and ratcheting: evolutionary models of cancer progression

Leonid A. Mirny, Kirill S. Korolev, Christopher D. McFarland, 2012 .

mirnylab/cooler: v0.8.5

Hendrik Strobelt, Peter Kerpedjiev, Leonid A. Mirny, 2019 .

Protein knot server: detection of knots in protein structures

Peter Virnau, Leonid A. Mirny, Grigory Kolesov, 2007, Nucleic Acids Res..

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

Leonid A. Mirny, Geoffrey Fudenberg, Maxim Imakaev, 2014, bioRxiv.

Corrigendum: The 4D nucleome project

Peter J. Park, Sheng Zhong, Jay Shendure, 2017, Nature.

A Stevedore's Protein Knot

Joanna I. Sulkowska, Hsiao-Ping Hsu, José N. Onuchic, 2010, PLoS Comput. Biol..

How a protein searches for its site on DNA: the mechanism of facilitated diffusion

Andrej Kosmrlj, Leonid A. Mirny, Michael Slutsky, 2009 .

Chromatin loops as modulators of enhancer-promoter interactions in their vicinity

Leonid A. Mirny, Geoffrey Fudenberg, Maxim Imakaev, 2014 .

Ultrastructural details of mammalian chromosome architecture

Leonid A. Mirny, Oliver J. Rando, Job Dekker, 2019, bioRxiv.

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

Eugene I. Shakhnovich, Leonid A. Mirny, L. Mirny, 2000, Nature Structural Biology.

Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.

Eric S. Lander, Leonid A. Mirny, Job Dekker, 2010, Journal of visualized experiments : JoVE.

Three-Dimensional Genome Architecture Influences Partner Selection for Chromosomal Translocations in Human Disease

Jesse M. Engreitz, Leonid A. Mirny, L. Mirny, 2012, PloS one.

Compaction and segregation of sister chromatids via active loop extrusion

Leonid A. Mirny, John F. Marko, Anton Goloborodko, 2016 .

Impact of deleterious passenger mutations on cancer progression

Shamil R. Sunyaev, Leonid A. Mirny, Christopher D. McFarland, 2012, Proceedings of the National Academy of Sciences.

GPU Based Molecular Dynamics Simulations of Polymer Rings in Concentrated Solution : Structure and Scaling(Statistical Physics and Topology of Polymers with Ramifications to Structure and Function of DNA and Proteins)

Daniel Reith, Peter Virnau, Leonid A. Mirny, 2011 .

Nucleosome-mediated cooperativity between transcription factors

Leonid A. Mirny, L. Mirny, 2009 .

Tug-of-war between driver and passenger mutations in cancer and other adaptive processes

Leonid A. Mirny, Christopher D. McFarland, Kirill S. Korolev, 2014, Proceedings of the National Academy of Sciences.

A pathway for mitotic chromosome formation

J. R. Paulson, Leonid A. Mirny, Johannes Nuebler, 2018, Science.

Using genome-wide measurements for computational prediction of SH2–peptide interactions

Leonid A. Mirny, Zeba Wunderlich, L. Mirny, 2009, Nucleic acids research.

MCM complexes are barriers that restrict cohesin-mediated loop extrusion

Leonid A. Mirny, Wen Tang, Ilya M. Flyamer, 2020, Nature.

Zfx Controls the Self-Renewal of Embryonic and Hematopoietic Stem Cells

Leonid A. Mirny, Boris Reizis, L. Mirny, 2007, Cell.

Emerging Evidence of Chromosome Folding by Loop Extrusion

Leonid A. Mirny, Nezar Abdennur, Geoffrey Fudenberg, 2018, bioRxiv.

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

Leonid A. Mirny, Brian J. Beliveau, Geoffrey Fudenberg, 2015, Nature.