Yuko Tsuchiya

发表

2P449 Improvement of the method for discriminating between biological and crystal-packing contacts in protein crystals(48. Bioinformatics, genomics and proteomics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Kengo Kinoshita, Nobutoshi Ito, Yuko Tsuchiya, 2006 .

2P036 Development of the validator for discriminating between physiological and crystal contacts

Yuko Tsuchiya, K. Kinoshita, N. Ito, 2005 .

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies

Haruki Nakamura, Daron M. Standley, Shide Liang, 2014, Bioinform..

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

Akira R. Kinjo, Hirofumi Suzuki, Haruki Nakamura, 2016, Nucleic Acids Res..

PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2005, Bioinform..

Discrimination between biological interfaces and crystal-packing contacts

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2008, Advances and applications in bioinformatics and chemistry : AABC.

Autoencoder-Based Detection of Dynamic Allostery Triggered by Ligand Binding Based on Molecular Dynamics

Yuko Tsuchiya, Kei Taneishi, Yasushige Yonezawa, 2019, J. Chem. Inf. Model..

Designing Digital Storytelling Workshops for Vulnerable People: A Collaborative Story-weaving Model from the "Pre-story Space"

Yuko Tsuchiya, Akiko Ogawa, 2014 .

High‐resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

Haruki Nakamura, Kenji Mizuguchi, Junichi Higo, 2014, Proteins.

Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2009, Advances and applications in bioinformatics and chemistry : AABC.

PreBI: prediction of biological interfaces of proteins in crystals

Kengo Kinoshita, Haruki Nakamura, Nobutoshi Ito, 2006, Nucleic Acids Res..

Dynamic features of homodimer interfaces calculated by normal‐mode analysis

Hiroshi Wako, Shigeru Endo, Kengo Kinoshita, 2012, Protein science : a publication of the Protein Society.

Docking of protein molecular surfaces with evolutionary trace analysis

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2007, Proteins.

The diversity of H3 loops determines the antigen‐binding tendencies of antibody CDR loops

Kenji Mizuguchi, Yuko Tsuchiya, K. Mizuguchi, 2016, Protein science : a publication of the Protein Society.

Structure‐based prediction of DNA‐binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2004, Proteins.

Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target

Kun-Yi Hsin, Hiroaki Kitano, Y-h. Taguchi, 2015, Scientific Reports.

Analyses of homo-oligomer interfaces of proteins from the complementarity of molecular surface, electrostatic potential and hydrophobicity.

Kengo Kinoshita, Haruki Nakamura, Yuko Tsuchiya, 2006, Protein engineering, design & selection : PEDS.

Conformational plasticity of JRAB/MICAL-L2 provides “law and order” in collective cell migration

Kenji Mizuguchi, Hideo Yokota, Masaomi Nishimura, 2016, Molecular biology of the cell.

Blind prediction of interfacial water positions in CAPRI

Kengo Kinoshita, Haruki Nakamura, Xiaoqin Zou, 2014, Proteins.

A study of CDR3 loop dynamics reveals distinct mechanisms of peptide recognition by T‐cell receptors exhibiting different levels of cross‐reactivity

Hiroshi Wako, Hiromichi Tsurui, Yuko Tsuchiya, 2018, Immunology.

INTERNAL STRUCTURE OBSERVATION OF A JAPANESE PANEL PAINTED SCREEN BY TERAHERTZ IMAGING TECHNIQUE

Yuko Tsuchiya, Y. Tsuchiya, Akiko Okimoto, 2022 .

Keto-enol tautomer of uracil and thymine

Masaaki Fujii, Yuko Tsuchiya, Y. Tsuchiya, 1988 .