Melanie Loth

发表

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Stephen R. Williams, Ludmila V. Danilova, Zachary W. Bent, 2022, bioRxiv.

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

J. Mesirov, P. Tamayo, Michael Reich, 2022, bioRxiv.

Triple-negative breast cancer metastasis involves complex epithelial-mesenchymal transition dynamics and requires vimentin

Gaurav Sharma, E. Fertig, A. Cimino-Mathews, 2022, Science Translational Medicine.

Inflammatory Signaling and Fibroblast-Cancer Cell Interactions Transfer from a Harmonized Human Single-cell RNA Sequencing Atlas of Pancreatic Ductal Adenocarcinoma to Organoid Co-Culture

L. Wood, E. Jaffee, L. Danilova, 2022, bioRxiv.

Inflammatory Signaling in Pancreatic Cancer Transfers Between a Single-cell RNA Sequencing Atlas and Co-Culture

L. Wood, J. Elisseeff, E. Jaffee, 2022 .

Community-wide hackathons to identify central themes in single-cell multi-omics

Matthew E. Ritchie, Joshua D. Welch, Lauren L. Hsu, 2021, Genome Biology.

DPP inhibition alters the CXCR3 axis and enhances NK and CD8+ T cell infiltration to improve anti-PD1 efficacy in murine models of pancreatic ductal adenocarcinoma

Shubhendu Trivedi, E. Fertig, L. Weiner, 2021, Journal for ImmunoTherapy of Cancer.

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.

L. Wood, Zachary W. Bent, A. Favorov, 2023, Cell systems.

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

J. Mesirov, Michael Reich, L. Goff, 2023, Nature Protocols.