Zhou Jason Shi

Pitfalls of genotyping microbial communities with rapidly growing genome collections

K. Pollard, Chunyu Zhao, Zhou Jason Shi, 2022, bioRxiv.

Maast: genotyping thousands of microbial strains efficiently

K. Pollard, Stephen Nayfach, Zhou Jason Shi, 2022, bioRxiv.

Fast and accurate metagenotyping of the human gut microbiome with GT-Pro

K. Pollard, Stephen Nayfach, Boris Dimitrov, 2021, Nature Biotechnology.

Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts

Byron J. Smith, K. Pollard, A. Abate, 2022, bioRxiv.

New insights from uncultivated genomes of the global human gut microbiome

Katherine S. Pollard, Nikos C. Kyrpides, Stephen Nayfach, 2019, Nature.

Identifying species-specific k-mers for fast and accurate metagenotyping with Maast and GT-Pro

K. Pollard, Stephen Nayfach, Zhou Jason Shi, 2023, STAR protocols.