A. Muruganujan

发表

Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation

P. Thomas, H. Mi, Dustin Ebert, 2022, Nucleic Acids Res..

Alliance of Genome Resources Portal: unified model organism research platform

Anushya Muruganujan, Kimberly Van Auken, Juancarlos Chan, 2019, Nucleic Acids Res..

The Gene Ontology resource: enriching a GOld mine

Anushya Muruganujan, Cathy H. Wu, Alex Bateman, 2020, Nucleic Acids Res..

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2018, Nucleic Acids Res..

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2016, Nucleic Acids Res..

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2012, Nucleic Acids Res..

PANTHER version 10: expanded protein families and functions, and analysis tools

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2015, Nucleic Acids Res..

The Sequence of the Human Genome

Timothy B. Stockwell, William H. Majoros, Helen M. Moore, 2001, Science.

PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence

P. Thomas, H. Mi, Anushya Muruganujan, 2020, PloS one.

Applications for protein sequence–function evolution data: mRNA/protein expression analysis and coding SNP scoring tools

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2006, Nucleic Acids Res..

Large-scale gene function analysis with the PANTHER classification system

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2013, Nature Protocols.

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

Anushya Muruganujan, Suzanna Lewis, Qing Dong, 2009, Nucleic Acids Res..

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

P. Thomas, H. Mi, Xiaosong Huang, 2019, Nature Protocols.

PANTHER: a library of protein families and subfamilies indexed by function.

M. Campbell, P. Thomas, A. Narechania, 2003, Genome research.

PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2020, Nucleic Acids Res..

The PANTHER database of protein families, subfamilies, functions and pathways

Hiroaki Kitano, Anushya Muruganujan, Huaiyu Mi, 2004, Nucleic Acids Res..

PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification

Anushya Muruganujan, Huaiyu Mi, Paul D. Thomas, 2003, Nucleic Acids Res..

PANTHER: Making genome‐scale phylogenetics accessible to all

P. Thomas, H. Mi, Laurent-Philippe Albou, 2021, Protein science : a publication of the Protein Society.

The Gene Ontology Resource: 20 years and still GOing strong

James C. Hu, Benjamin M. Good, Steven J. Marygold, 2019 .

Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life

Anushya Muruganujan, Paul D. Thomas, Xiaosong Huang, 2018, Nucleic Acids Res..

Erratum: PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification (Nucleic Acids Research (2003) vol. 31 (334-341))

M. Campbell, P. Thomas, I. Ladunga, 2003 .

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools

T. A. Holland, C. Ball, G. Sherlock, 2014, Nucleic Acids Research.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools

Anushya Muruganujan, Peter D. Karp, Deborah A. Siegele, 2013, Nucleic Acids Res..

Harmonizing model organism data in the Alliance of Genome Resources

Adam J. Wright, Steven J. Marygold, Yvonne M. Bradford, 2022, Genetics.

BioPAX support in CellDesigner

Yukiko Matsuoka, Hiroaki Kitano, Anushya Muruganujan, 2011, Bioinform..

BDQC: a general-purpose analytics tool for domain-blind validation of Big Data

Arthur W. Toga, Anushya Muruganujan, Carl Kesselman, 2018, bioRxiv.

Bioinformatics Applications Note Systems Biology Biopax Support in Celldesigner

E. Demir, H. Mi, Yukiko Matsuoka, 2022 .

Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0)

Anushya Muruganujan, Huaiyu Mi, Xiaosong Huang, 2019, Nature Protocols.

Updates to the Alliance of Genome Resources Central Infrastructure Alliance of Genome Resources Consortium

Adam J. Wright, Troy J. Pells, Steven J. Marygold, 2023, bioRxiv.

PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference

P. Thomas, H. Mi, Anushya Muruganujan, 2020, Plant direct.