Elizabeth A. Cummins

Pangenome evolution in Escherichia coli is sequence type, not phylogroup, specific

J. McInerney, R. Hall, A. McNally, 2022, bioRxiv.

Prokaryote pangenomes are dynamic entities.

J. McInerney, R. Hall, A. McNally, 2022, Current opinion in microbiology.

The role of potentiating mutations in the evolution of pandemic Escherichia coli clones.

R. Hall, A. McNally, Elizabeth A. Cummins, 2021, European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology.

Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types

J. McInerney, R. Hall, A. McNally, 2022, Microbial genomics.

GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes

W. van Schaik, A. McNally, Haiyang Liu, 2022, bioRxiv.

Gene-gene relationships in an Escherichia coli accessory genome are linked to function and mobility

J. McInerney, F. Whelan, A. McNally, 2021, bioRxiv.

Loss of type VI secretion systems in multi-drug resistant Escherichia coli clones

S. Dunn, A. McNally, R. Moran, 2023, bioRxiv.

Non-antibiotic pharmaceuticals exhibit toxicity against Escherichia coli at environmentally relevant concentrations with no evolution of cross-resistance to antibiotics

A. McNally, Michael J. Bottery, D. Sareen, 2023, bioRxiv.

Parallel loss of type VI secretion systems in two multi-drug resistant Escherichia coli lineages

S. Dunn, A. McNally, R. Moran, 2023, bioRxiv.

Non-antibiotic pharmaceuticals are toxic against Escherichia coli with no evolution of cross-resistance to antibiotics

Michael J. Bottery, D. Sareen, J. Blair, 2024, npj Antimicrobials and Resistance.