Chia-Lin Wei

发表

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

Harianto Tjong, Sandeep Namburi, Ping Wang, 2020, Science Advances.

Transcriptional Interactome in Mouse Genome

Yijun Ruan, Chia-Lin Wei, Yubo Zhang, 2011 .

Paired-end diTagging for transcriptome and genome analysis.

Yijun Ruan, Chia-Lin Wei, Chia-Lin Wei, 2006, Current protocols in molecular biology.

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.

Yijun Ruan, Chia-Lin Wei, Mark B Gerstein, 2007, Genome research.

Gene expression An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

Wing-Kin Sung, Chia-Lin Wei, W. Sung, 2008 .

The Schistosoma japonicum genome reveals features of host–parasite interplay

Wei Huang, Zheng Feng, Shengyue Wang, 2009, Nature.

Long Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations and Fusion-Point-Guided Reconstruction of Amplicons

Niranjan Nagarajan, Wing-Kin Sung, Guillaume Bourque, 2012, PloS one.

Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

Giuseppe Testa, Wing-Kin Sung, Chia-Lin Wei, 2009, The EMBO journal.

Picky Comprehensively Detects High Resolution Structural Variants in Nanopore Long Reads

Harianto Tjong, Edison T. Liu, Chia-Lin Wei, 2018, Nature Methods.

Interactome Maps of Mouse Gene Regulatory Domains Reveal Basic Principles of Transcriptional Regulation

J. Keith Joung, Yijun Ruan, Zhonghui Tang, 2013, Cell.

Genome-wide mapping of RELA(p65) binding identifies E2F1 as a transcriptional activator recruited by NF-kappaB upon TLR4 activation.

Joshy George, Wing-Kin Sung, Yijun Ruan, 2007, Molecular cell.

Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors

Guillaume Bourque, Chia-Lin Wei, Arsen O. Batagov, 2012, Proceedings of the National Academy of Sciences.

Multiplex chromatin interactions with single-molecule precision

Daniel Capurso, Simon Zhongyuan Tian, Yijun Ruan, 2019, Nature.

CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression

Lusy Handoko, Paul Flicek, Thomas LaFramboise, 2010, PLoS genetics.

Global mapping of c-Myc binding sites and target gene networks in human B cells

Zhiping Weng, Wing-Kin Sung, Vladimir A. Kuznetsov, 2006, Proceedings of the National Academy of Sciences.

Chromatin Interaction Analysis Using Paired‐End Tag Sequencing

Yijun Ruan, Chia-Lin Wei, Chia-Lin Wei, 2010, Current protocols in molecular biology.

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.

Philipp Kapranov, Jennifer Harrow, Roderic Guigó, 2007, Genome research.