E. Willighagen

发表

The LOTUS initiative for open knowledge management in natural products research

C. Steinbeck, R. Page, D. Mietchen, 2022, eLife.

Unifying the identification of biomedical entities with the Bioregistry

Benjamin M. Gyori, Charles Tapley Hoyt, Daniel S. Himmelstein, 2022, bioRxiv.

The Bioregistry: Unifying the Identification of Biomedical Entities through an Integrative, Open, Community-driven Metaregistry

Benjamin M. Gyori, Charles Tapley Hoyt, Daniel S. Himmelstein, 2022 .

Research Techniques Made Simple: Lipidomic Analysis in Skin Research

F. Gruber, M. Kutmon, D. Slenter, 2022, Journal of Investigative Dermatology.

Unifying the identification of biomedical entities with the Bioregistry

Benjamin M. Gyori, Charles Tapley Hoyt, Daniel S. Himmelstein, 2022, bioRxiv.

The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry

Benjamin A. Shoemaker, Emma L. Schymanski, Evan E. Bolton, 2022, Environmental Sciences Europe.

Wikipedia on the CompTox Chemicals Dashboard: Connecting Resources to Enrich Public Chemical Data

A. Richard, I. Thillainadarajah, V. Samano, 2022, J. Chem. Inf. Model..

A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

Benjamin M. Gyori, John A. Bachman, Sara Sadat Aghamiri, 2022, bioRxiv.

Guiding the choice of informatics software and tools for lipidomics research applications

G. Siuzdak, A. Shevchenko, C. O’Donovan, 2022, Nature Methods.

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

Benjamin M. Gyori, John A. Bachman, Sara Sadat Aghamiri, 2021, Molecular systems biology.

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

Egon L. Willighagen, Chris T. A. Evelo, Martijn P. van Iersel, 2015, BMC Bioinformatics.

Molecular Adverse Outcome Pathways: towards the implementation of transcriptomics data in risk assessments

C. Evelo, Marvin Martens, E. Willighagen, 2023, bioRxiv.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Amir K. Foroushani, Yuanfang Guan, Jaewoo Kang, 2019, Nature Communications.

PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity

C. Evelo, A. Ammar, R. Cavill, 2023, Journal of Cheminformatics.

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment

Egon L. Willighagen, Christoph Steinbeck, Georgia Tsiliki, 2015, Journal of Biomedical Semantics.

Extending inherited metabolic disorder diagnostics with biomarker interaction visualizations

C. Evelo, D. Slenter, J. Bierau, 2023, Orphanet Journal of Rare Diseases.

ELIXIR and Toxicology: a community in development [version 1; peer review: 1 approved, 1 approved with reservations]

Emma L. Schymanski, Thomas E. Exner, Evan E. Bolton, 2022 .

ELIXIR and Toxicology: a community in development

Emma L. Schymanski, Thomas E. Exner, Evan E. Bolton, 2021, F1000Research.

ELIXIR and Toxicology: a community in development [version 1; peer review: awaiting peer review]

Emma L. Schymanski, Thomas E. Exner, Evan E. Bolton, 2021 .

Creating, curating and querying computer models of biological pathways for Inherited Metabolic Disorders

D. Slenter, E. Willighagen, 2023, bioRxiv.

WikiPathways: Integrating Pathway Knowledge with Clinical Data

M. Kutmon, D. Slenter, E. Willighagen, 2022, Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases.

BridgeDb and Wikidata: a powerful combination generating interoperable open research (BridgeDb)

M. Kutmon, D. Slenter, Marvin Martens, 2022, Research Ideas and Outcomes.

Linking nanomaterial-induced mitochondrial dysfunction to existing adverse outcome pathways for chemicals.

A. Sosnowska, T. Puzyn, P. Hoet, 2023, ALTEX.

COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

C. Auffray, H. Kitano, M. Gillespie, 2020, Scientific Data.

The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework

Thomas E. Exner, Holly M. Mortensen, C. Evelo, 2022, Frontiers in Toxicology.

The FAIR Cookbook - the essential resource for and by FAIR doers

Allyson L. Lister, M. Thurston, H. V. van Vlijmen, 2023, Scientific data.

From principles to reality. FAIR implementation in the nanosafety community

Thomas E. Exner, Galo J. A. A. Soler-Illia, M. Bañares, 2023, Nano Today.

Artificial intelligence for natural product drug discovery

Marwin H. S. Segler, Roger G. Linington, Katherine R. Duncan, 2023, Nature Reviews Drug Discovery.

A data reusability assessment in the nanosafety domain based on the NSDRA framework followed by an exploratory quantitative structure activity relationships (QSAR) modeling targeting cellular viability.

C. Evelo, A. Ammar, D. Gardini, 2023, NanoImpact.

The Chemical Translation Service—a web-based tool to improve standardization of metabolomic reports

T. Kind, Gert Wohlgemuth, E. Willighagen, 2010, Bioinform..

Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

Benjamin M. Gyori, John A. Bachman, Takahiro G. Yamada, 2024, Frontiers in immunology.