Philip Jones

发表

The implications of alternative splicing in the ENCODE protein complement

Hagen Blankenburg, Fidel Ramírez, Thomas Lengauer, 2007, Proceedings of the National Academy of Sciences.

HUPO Brain Proteome Project pilot phase; Automated reprocessing pipeline for searching heterogenic data

Lennart Martens, Michael Müller, Gerhard Körting, 2006 .

Analysis of the experimental detection of central nervous system‐related genes in human brain and cerebrospinal fluid datasets

Lennart Martens, Juan Antonio Vizcaíno, Rolf Apweiler, 2008, Proteomics.

InterProScan 5: genome-scale protein function classification

Matthew Fraser, Alex L. Mitchell, Hamish McWilliam, 2014, Bioinform..

Analyzing large-scale proteomics projects with latent semantic indexing.

Lennart Martens, Juan Antonio Vizcaíno, Rolf Apweiler, 2008, Journal of proteome research.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

Lennart Martens, Rolf Apweiler, Henning Hermjakob, 2007, BMC Bioinformatics.

PRIDE: The proteomics identifications database

Lennart Martens, Chris F. Taylor, Rolf Apweiler, 2005, Proteomics.

InterPro in 2011: new developments in the family and domain prediction database

Robert D. Finn, Matthew Fraser, Cathy H. Wu, 2011, Nucleic acids research.

PRIDE: a public repository of protein and peptide identifications for the proteomics community

Lennart Martens, Chris F. Taylor, Rolf Apweiler, 2005, Nucleic Acids Res..

PRIDE: new developments and new datasets

Lennart Martens, Henning Hermjakob, Richard G. Côté, 2007, Nucleic Acids Res..

Integrating biological data – the Distributed Annotation System

Hagen Blankenburg, Robert D. Finn, Andreas Prlic, 2008, BMC Bioinformatics.

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data

Matthew Fraser, Guy Cochrane, Susanna-Assunta Sansone, 2013, Nucleic Acids Res..

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries

Rolf Apweiler, Henning Hermjakob, Richard G. Côté, 2006, BMC Bioinformatics.

Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase

Lennart Martens, Chris F. Taylor, Kai A Reidegeld, 2006, Proteomics.

Proteomic Data Exchange and Storage

Chris F. Taylor, Rolf Apweiler, Henning Hermjakob, 2007 .

An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases

Lennart Martens, Juan Antonio Vizcaíno, Rolf Apweiler, 2007, German Conference on Bioinformatics.

The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?".

Nigel W. Hardy, Chris F. Taylor, Marco Brandizi, 2008, Omics : a journal of integrative biology.

Dasty and UniProt DAS: a perfect pair for protein feature visualization

Rolf Apweiler, Henning Hermjakob, Thomas A. Down, 2005, Bioinform..

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries

Lennart Martens, Rolf Apweiler, Henning Hermjakob, 2008, Nucleic Acids Res..

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers

Celia W. G. van Gelder, Rafael C. Jimenez, Marie-Claude Blatter, 2011, Briefings Bioinform..

Bioinformatics training: a review of challenges, actions and support requirements

Marie-Claude Blatter, Thomas Blicher, Catherine Brooksbank, 2010, Briefings Bioinform..

Second Proteomics Standards Initiative Spring Workshop

Chris F. Taylor, Rolf Apweiler, Henning Hermjakob, 2005, Expert review of proteomics.

Further Steps in Standardisation Report of the Second Annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17–20th April 2005)

Chris F. Taylor, Rolf Apweiler, Henning Hermjakob, 2005, Proteomics.

MyDas, an Extensible Java DAS Server

Andrew M. Jenkinson, Gustavo A. Salazar, Antony F. Quinn, 2012, PloS one.

InterPro in 2011: new developments in the family and domain prediction database

Cathy H. Wu, Sarah W. Burge, Antony F. Quinn, 2012, Nucleic Acids Research.

Submit Your Interaction Data the IMEx Way

Henning Hermjakob, Samuel Kerrien, Sandra Orchard, 2007, Proteomics.

The InterPro BioMart: federated query and web service access to the InterPro Resource

Philip Jones, Conor McMenamin, Sarah Hunter, 2011, Database J. Biol. Databases Curation.

Metagenomic analysis: the challenge of the data bonanza

Alex L. Mitchell, Philip Jones, Sarah Hunter, 2012, Briefings Bioinform..

Proteomic data exchange and storage: the need for common standards and public repositories.

Chris F. Taylor, Rolf Apweiler, Henning Hermjakob, 2007, Methods in molecular biology.