Stephen K. Burley

发表

DCC: a Swiss army knife for structure factor analysis and validation

John D. Westbrook, Helen M. Berman, Huanwang Yang, 2016, Journal of applied crystallography.

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

David S. Goodsell, Zukang Feng, John D. Westbrook, 2018, Nucleic Acids Res..

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

David S. Goodsell, Andreas Prlic, Zukang Feng, 2016, Nucleic Acids Res..

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank

Andreas Prlic, Stephen K. Burley, Cole H. Christie, 2016, Bioinform..

D3R grand challenge 2015: Evaluation of protein–ligand pose and affinity predictions

Shuai Liu, Huanwang Yang, Stephen K. Burley, 2016, Journal of Computer-Aided Molecular Design.

Response to On prompt update of literature references in the Protein Data Bank

Haruki Nakamura, Helen M. Berman, Stephen K. Burley, 2014, Acta crystallographica. Section D, Biological crystallography.

D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Huanwang Yang, Stephen K. Burley, W. Patrick Walters, 2020, Journal of Computer-Aided Molecular Design.

Quaternary structure evaluation tool for protein assemblies

Stephen K. Burley, Peter W. Rose, Andreas Prlić, 2017 .

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

David S. Goodsell, Andreas Prlic, Philip E. Bourne, 2014, Nucleic Acids Res..

Real-time structural motif searching in proteins using an inverted index strategy

Stephen K. Burley, Alexander S. Rose, Sebastian Bittrich, 2020, bioRxiv.

D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings

Huanwang Yang, Stephen K. Burley, W. Patrick Walters, 2018, Journal of Computer-Aided Molecular Design.

New York-Structural GenomiX Research Consortium (NYSGXRC): A Large Scale Center for the Protein Structure Initiative

Stephen K. Burley, Andrej Sali, Mark R. Chance, 2005, Journal of Structural and Functional Genomics.

Analysis of impact metrics for the Protein Data Bank

Stephen K. Burley, Chenghua Shao, Monica Sekharan, 2018, Scientific Data.

D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies

Shuai Liu, Huanwang Yang, Stephen K. Burley, 2017, Journal of Computer-Aided Molecular Design.

Validation of Structures in the Protein Data Bank

Naohiro Kobayashi, Haruki Nakamura, Zukang Feng, 2017, Structure.

Enabling findability, accessibility, interoperability, and reusability with improved data representation of carbohydrates in the Protein Data Bank

Zukang Feng, John D. Westbrook, Jasmine Young, 2019 .

RCSB Protein Data Bank 1D tools and services

John D. Westbrook, Stephen K. Burley, Jose M. Duarte, 2020, Bioinform..

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

David S. Goodsell, Zukang Feng, John D. Westbrook, 2020, Nucleic Acids Res..

The hunt for 8-oxoguanine deaminase.

Peter Kolb, Stephen K. Burley, Brian K. Shoichet, 2010, Journal of the American Chemical Society.

Electrostatic interactions in aromatic oligopeptides contribute to protein stability

Stephen K. Burley, Gregory A. Petsko, G. Petsko, 1989 .

Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies

Stephen K. Burley, Narayanan Eswar, Ursula Pieper, 2009, Journal of Structural and Functional Genomics.

Co-crystal structure of TBP recognizing the minor groove of a TATA element

Stephen K. Burley, S. Burley, D. Nikolov, 1993, Nature.

Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain

Stephen K. Burley, S. Burley, J. Breslow, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Crystal Structure of Negative Cofactor 2 Recognizing the TBP-DNA Transcription Complex

Sohail Malik, Stephen K. Burley, S. Burley, 2001, Cell.

The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology

David S. Goodsell, Helen M. Berman, Stephen K. Burley, 2015, PLoS biology.

1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG

Stephen K. Burley, S. Burley, Joseph L. Kim, 1994, Nature Structural Biology.

An overview of structural genomics

Stephen K. Burley, S. Burley, 2000, Nature Structural Biology.

Multivariate analyses of quality metrics for crystal structures in the PDB archive

John D. Westbrook, Huanwang Yang, Stephen K. Burley, 2017 .

Response to Paoli

Stephen K. Burley, Andrej Sali, Roland Beckmann, 2001, Nature Structural Biology.

Crystal structure of a long-chain-fatty-acid-CoA ligase (FadD1) from Archaeoglobus fulgidus

Stephen K. Burley, Kandavelu Palani, Subramanyam Swaminathan, 2009 .

X-Ray Structures of Myc-Max and Mad-Max Recognizing DNA Molecular Bases of Regulation by Proto-Oncogenic Transcription Factors

Stephen K. Burley, Satish K. Nair, S. Burley, 2003, Cell.

High-throughput Limited Proteolysis/Mass Spectrometry for Protein Domain Elucidation

Stephen K. Burley, Jeffery B. Bonanno, J. Michael Sauder, 2005, Journal of Structural and Functional Genomics.

Functional Annotation and Structural Characterization of a Novel Lactonase Hydrolyzing d-Xylono-1,4-lactone-5-phosphate and l-Arabino-1,4-lactone-5-phosphate

Peter Kolb, Stephen K. Burley, Brian K. Shoichet, 2014, Biochemistry.

Steven L. Cohen, Stephen K. Burley, Alexander Hoffmann, 1996, Nature.

Performance of the double multilayer monochromator on the NSLS wiggler beam line X25

Stephen K. Burley, Zhijian Yin, Robert M. Sweet, 1997 .

Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain

Stephen K. Burley, A. Ferré-D’Amaré, S. Burley, 1993, Nature.

Dimerization energetics of benzene and aromatic amino acid side chains

Stephen K. Burley, Gregory A. Petsko, G. Petsko, 1986 .

Crystal structures of ribosome anti-association factor IF6

Stephen K. Burley, Andrej Sali, A. Sali, 2000, Nature Structural Biology.

X-Ray Structures of the Universal Translation Initiation Factor IF2/eIF5B Conformational Changes on GDP and GTP Binding

Stephen K. Burley, S. Burley, C. Cao, 2000, Cell.

Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding

Stephen K. Burley, Walter Reith, Bernard P. Roques, 2000, Nature.

RCSB Protein Data Bank: Views of structural biology for basic and applied research

John D. Westbrook, Helen M. Berman, Stephen K. Burley, 2016 .

Protein–nucleic acid interactions: Editorial overview

Stephen K. Burley, Daniela Rhodes, 2000 .

RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules

David S. Goodsell, Stephen K. Burley, Shuchismita Dutta, 2016 .

Fragment‐based Lead Discovery and Optimization Using X‐Ray Crystallography, Computational Chemistry, and High‐throughput Organic Synthesis

Stephen K. Burley, Vicki L. Nienaber, S. Burley, 2006 .

Crystal Structure of a GCN5-Related N-acetyltransferase Serratia marcescens Aminoglycoside 3-N-acetyltransferase

Stephen K. Burley, Andrej Sali, A. Sali, 1998, Cell.