Mehdi Mirzaie

发表

A systematic survey of centrality measures for protein-protein interaction networks

Olaf Wolkenhauer, Ali Salehzadeh-Yazdi, Minoo Ashtiani, 2017 .

Updates on drug-target network; facilitating polypharmacology and data integration by growth of DrugBank database

Mohieddin Jafari, Mehdi Mirzaie, Farnaz Barneh, 2015, Briefings Bioinform..

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis

Soheil Jahangiri-Tazehkand, Mohieddin Jafari, Minoo Ashtiani, 2019, BMC Bioinformatics.

UNaProd: A Universal Natural Product Database for Materia Medica of Iranian Traditional Medicine

Mohieddin Jafari, Mehrdad Karimi, Ayeh Naghizadeh, 2020, Evidence-based complementary and alternative medicine : eCAM.

Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms

Mehdi Sadeghi, Mohieddin Jafari, Mehdi Mirzaie, 2015, BMC Bioinformatics.

A systematic survey of centrality measures for protein-protein interaction networks

Olaf Wolkenhauer, Mohieddin Jafari, Ali Salehzadeh-Yazdi, 2017, bioRxiv.

Identification of native protein structures captured by principal interactions

Mehdi Mirzaie, M. Mirzaie, 2019, BMC Bioinformatics.

Revisiting Temperaments with a Fine-Tuned Categorization Using Iranian Traditional Medicine General Ontology

Mehrdad Karimi, Mahdi Alizadeh Vaghasloo, Ayeh Naghizadeh, 2019 .

IMAN: Interlog protein network reconstruction, Matching and ANalysis

Mohieddin Jafari, Mehdi Mirzaie, Payman Nickchi, 2016 .

Game theory approach in analyzing biological networks

Mehdi Mirzaie, Mohieddin Jafari, Razieh Bostani, 2018 .

Revisiting the Implementation of the Network Centralities: A Survey on Protein-Protein Interaction Networks

Olaf Wolkenhauer, Mohieddin Jafari, Ali Salehzadeh-Yazdi, 2017 .

Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer

Tuan Zea Tan, Mohieddin Jafari, Mehdi Mirzaie, 2019, Briefings Bioinform..

Revisiting the General Concept of Network Centralities: A Propose for Centrality Analysis in Network Science

Olaf Wolkenhauer, Mohieddin Jafari, Ali Salehzadeh-Yazdi, 2017 .

Optimal control and differential game solutions for social distancing in response to epidemics of infectious diseases on networks

Alaeddin Malek, Mehdi Mirzaie, Mohammadali Dashtbali, 2020, Optimal control applications & methods.

Three-way interaction model with switching mechanism as an effective strategy for tracing functionally-related genes

Sayed-Amir Marashi, Mehdi Mirzaie, Fatemeh Goshadrou, 2018, Expert review of proteomics.

CINNA: An R package for deciphering Central Informative Nodes in Network Analysis

Minoo Ashtiani, Mehdi Mirzaie, Mohieddin Jafari, 2017, bioRxiv.

Ranked k-medoids: A fast and accurate rank-based partitioning algorithm for clustering large datasets

Farahnaz Sadoughi, Mehdi Mirzaie, Seyed Mohammad Razavi Zadegan, 2013, Knowl. Based Syst..

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, Mapping and Mining ANalysis

Soheil Jahangiri-Tazehkand, Mohieddin Jafari, Mehdi Mirzaie, 2018 .

CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis

Mohieddin Jafari, Minoo Ashtiani, Mehdi Mirzaie, 2018, Bioinform..

Investigating the importance of Delaunay-based definition of atomic interactions in scoring of protein-protein docking results.

Rahim Jafari, Mehdi Mirzaie, Mehdi Sadeghi, 2016, Journal of molecular graphics & modelling.

IrGO: Iranian traditional medicine General Ontology and knowledge base

Mehrdad Karimi, Mahdi Alizadeh Vaghasloo, Ayeh Naghizadeh, 2021, J. Biomed. Semant..

Facilitating the design of combination therapy in cancer using multipartite network models: Emphasis on acute myeloid leukemia

Mehdi Mirzaie, Farnaz Barneh, Jing Tang, 2021, bioRxiv.

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data.

Mostafa Rezaei-Tavirani, Mehdi Sadeghi, Sayed-Amir Marashi, 2013, Biochimica et biophysica acta.

A logic-based dynamic modeling approach to explicate the evolution of the central dogma of molecular biology

Mohieddin Jafari, Mehdi Mirzaie, Mohieddin Jafari, 2017, bioRxiv.

Evolutionarily conserved motifs and modules in mitochondrial protein-protein interaction networks.

Mostafa Rezaei-Tavirani, Mehdi Sadeghi, Sayed-Amir Marashi, 2013, Mitochondrion.

Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways

Mohieddin Jafari, Sadegh Azimzadeh Jamalkandi, Mehdi Mirzaie, 2016, bioRxiv.

Signaling network of lipids as a comprehensive scaffold for omics data integration in sputum of COPD patients.

Mohieddin Jafari, Sadegh Azimzadeh Jamalkandi, Mehdi Mirzaie, 2015, Biochimica et biophysica acta.

Proteomics and Traditional Medicine: New Aspect in Explanation of Temperaments

Mehrdad Karimi, Mohieddin Jafari, Mehdi Mirzaie, 2014, Complementary Medicine Research.

Delaunay‐based nonlocal interactions are sufficient and accurate in protein fold recognition

Mehdi Sadeghi, Mehdi Mirzaie, M. Sadeghi, 2014, Proteins.

Systems Biomedicine of Rabies Delineates the Affected Signaling pathways

Mohieddin Jafari, Mehdi Mirzaie, Behrouz Vaziri, 2016 .

IrGO 1.0: Iranian traditional medicine General Ontology

Mehrdad Karimi, Mohieddin Jafari, Mahdi Alizadeh Vaghasloo, 2018 .

A distance‐dependent atomic knowledge‐based potential and force for discrimination of native structures from decoys

Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, 2009, Proteins.

Valproic acid inhibits the protective effects of stromal cells against chemotherapy in breast cancer: Insights from proteomics and systems biology

Mohieddin Jafari, Minoo Ashtiani, Mehdi Mirzaie, 2018, Journal of cellular biochemistry.

Protein complex prediction: A survey.

Javad Zahiri, Ghasem Mahdevar, Mehdi Mirzaie, 2019, Genomics.