Sushmita Roy

发表

Information-Theoretic Inference of Gene Networks Using Backward Elimination

Daniel Marbach, Patrick Meyer, Manolis Kellis, 2010, BIOCOMP.

Simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization

Sushmita Roy, Da-Inn Lee, Sushmita Roy, 2020, bioRxiv.

A Hidden-State Markov Model for Cell Population Deconvolution

Anthony D. Aragon, Terran Lane, Sushmita Roy, 2006, J. Comput. Biol..

A datamining approach to cell population deconvolution from gene expressions using particle filters

Terran Lane, Sushmita Roy, Margaret Werner-Washburne, 2005, BIOKDD.

Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum

Hua Lin, Christopher Becker, Sushmita Roy, 2004, Bioinform..

High-order interactions observed in multi-task intrinsic networks are dominant indicators of aberrant brain function in schizophrenia

Vince D. Calhoun, Vamsi K. Potluru, Sergey M. Plis, 2014, NeuroImage.

On fuzzy rough oscillatory region and its applications on data mining

Sushmita Roy, 2011 .

Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks

James A. Thomson, Ron M. Stewart, Sushmita Roy, 2013, PLoS Comput. Biol..

Learning condition-specific networks

Sushmita Roy, Sushmita Roy, 2009 .

Inference of Functional Networks of Condition-Specific Response--A Case Study Of Quiescence In Yeast

Diego Martínez, Margaret Werner-Washburne, Terran Lane, 2008, Pacific Symposium on Biocomputing.

Integrative Approaches for Inference of Genome-Scale Gene Regulatory Networks.

Deborah Chasman, Alireza F. Siahpirani, Sushmita Roy, 2018, Methods in molecular biology.

In silico prediction of high-resolution Hi-C interaction matrices

Sushmita Roy, Shilu Zhang, Deborah Chasman, 2019, Nature Communications.

Integrating Transcriptomic and Proteomic Data Using Predictive Regulatory Network Models of Host Response to Pathogens

Deborah Chasman, Amie J. Eisfeld, Yoshihiro Kawaoka, 2016, PLoS Comput. Biol..

GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization

Sushmita Roy, Da-Inn Lee, Sushmita Roy, 2020, Genome Biology.

Data Visualization on Movies Dataset usingPython

Sushmita Roy, 2019 .

Learning structurally consistent undirected probabilistic graphical models

Terran Lane, Sushmita Roy, Margaret Werner-Washburne, 2009, ICML '09.

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules

Manolis Kellis, Aviv Regev, Dawn Thompson, 2013, Genome research.

The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures

Susan M. Young, Mark B. Carter, George S. Davidson, 2011, Molecular biology of the cell.

Inference of cell type specific regulatory networks on mammalian lineages.

Deborah Chasman, Sushmita Roy, Deborah Chasman, 2017, Current opinion in systems biology.

Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.

Wei Yu, Sushmita Roy, Derek J. Bailey, 2013, Molecular cell.

SIRT3 mediates multi-tissue coupling for metabolic fuel switching.

Jing Fan, Sushmita Roy, John M Denu, 2015, Cell metabolism.

Accessed Terms of Use

Tamer Kahveci, Daniel Marbach, Manolis Kellis, 2022 .

Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.

Peter D Wentzell, Sushmita Roy, Margaret Werner-Washburne, 2004, Molecular biology of the cell.

Comparative Functional Genomics of the Fission Yeasts

Manolis Kellis, Nir Friedman, Hanah Margalit, 2011, Science.

A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions

Sushmita Roy, Ferhat Ay, F. Ay, 2016, Genome Biology.

Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits

Alexis Battle, Alireza F. Siahpirani, Ashis Saha, 2018, bioRxiv.

Comparative analysis of gene regulatory networks: from network reconstruction to evolution.

Aviv Regev, Dawn Thompson, Sushmita Roy, 2015, Annual review of cell and developmental biology.

Evolutionary principles of modular gene regulation in yeasts

Manolis Kellis, Aviv Regev, Sushmita Roy, 2013, eLife.