D. Ermolenko

发表

A post-translational regulatory switch on UPF1 controls targeted mRNA degradation

L. Maquat, Wencheng Li, B. Tian, 2014, Genes & development.

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

N. Grigorieff, A. Brilot, A. Korostelev, 2014 .

Caught on Camera: Intermediates of Ribosome Recycling.

C. Ling, D. Ermolenko, 2016, Structure.

Ribosome subunit joining frozen in time.

C. Ling, D. Ermolenko, 2015, Structure.

Following movement of the L1 stalk between three functional states in single ribosomes

Taekjip Ha, Lee Hoang, Harry F Noller, 2009, Proceedings of the National Academy of Sciences.

Activation of Elongation Factor G by Phosphate Analogues

Elie Farah, D. Ermolenko, E. Salsi, 2016 .

A New Generic Enzyme Immunoassay for Sulfonamides

S. Eremin, A. Zherdev, B. Dzantiev, 2007 .

Production of Polyclonal Antibodies and Development of Fluorescence Polarization Immunoassay for Sulfanilamide

S. Eremin, A. Zherdev, B. Dzantiev, 2005 .

Controlled gating and electrical detection of single 50S ribosomal subunits through a solid-state nanopore in a microfluidic chip.

Holger Schmidt, Harry F Noller, D. Deamer, 2011, Biosensors & bioelectronics.

Intrinsically unstructured sequences in the mRNA 3' UTR reduce the ability of poly(A) tail to enhance translation.

D. Mathews, Wan-Jung C. Lai, Gregory Ballard, 2022, Journal of molecular biology.

Antiperoxidase antibodies enhance refolding of horseradish peroxidase.

V. Popov, A. Zherdev, B. Dzantiev, 2002, Biochemical and biophysical research communications.

Antibodies as specific chaperones

A. Zherdev, B. Dzantiev, D. Ermolenko, 2004, Biochemistry (Moscow).

Bacterial cold-shock proteins

G. Makhatadze, D. N. Ermolenko, G. I. Makhatadze, 2002, Cellular and Molecular Life Sciences CMLS.

Antibodies as specific chaperones

A. Zherdev, B. Dzantiev, D. Ermolenko, 2004, Biochemistry (Moscow).

Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome

A. Korostelev, E. Svidritskiy, C. Ling, 2013, Proceedings of the National Academy of Sciences.

Ensemble and single-molecule FRET studies of protein synthesis.

Wan-Jung C. Lai, D. Ermolenko, 2017, Methods.

Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage

Quanwei Zhang, Dmitri N. Ermolenko, Andrei Seluanov, 2013, Proceedings of the National Academy of Sciences.

Making ends meet: new functions of mRNA secondary structure

D. Mathews, D. N. Ermolenko, D. Ermolenko, 2020, bioRxiv.

Initiation factor 2 stabilizes the ribosome in a semirotated conformation

C. Ling, D. Ermolenko, 2015, Proceedings of the National Academy of Sciences.

Antibiotics that bind to the A site of the large ribosomal subunit can induce mRNA translocation.

H. Noller, T. Ha, P. Cornish, 2013, RNA.

Spontaneous intersubunit rotation in single ribosomes.

Taekjip Ha, Harry F Noller, H. Noller, 2008, Molecular cell.

Movement of elongation factor G between compact and extended conformations.

Zoe Netter, Elie Farah, D. Ermolenko, 2015, Journal of molecular biology.

Following movement of domain IV of elongation factor G during ribosomal translocation

Elie Farah, D. Ermolenko, E. Salsi, 2014, Proceedings of the National Academy of Sciences.

Structure of the ribosome with elongation factor G trapped in the pretranslocation state

N. Grigorieff, A. Brilot, A. Korostelev, 2013, Proceedings of the National Academy of Sciences.

mRNA Translocation Occurs During the Second Step of Ribosomal Intersubunit Rotation

Dmitri N. Ermolenko, Harry F. Noller, H. Noller, 2010, Nature Structural &Molecular Biology.

Elongation factor G stabilizes the hybrid-state conformation of the 70S ribosome.

Harry F Noller, H. Noller, Dmitri N Ermolenko, 2007, RNA.

Noncharged amino acid residues at the solvent‐exposed positions in the middle and at the C terminus of the α‐helix have the same helical propensity

G. Makhatadze, J. Richardson, D. Ermolenko, 2003, Protein science : a publication of the Protein Society.

Extending the spacing between the Shine-Dalgarno sequence and P-site codon reduces the rate of mRNA translocation

D. N. Ermolenko, H. Wakabayashi, Chandani Warnasooriya, 2020, bioRxiv.

mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances

David H. Mathews, Dmitri N. Ermolenko, Stanislav Bellaousov, 2018, Nature Communications.

The formation of intramolecular secondary structure brings mRNA ends in close proximity

David H. Mathews, Dmitri N. Ermolenko, Stanislav Bellaousov, 2018, bioRxiv.

An extended U2AF65–RNA-binding domain recognizes the 3′ splice site signal

Michael R. Green, A. Agrawal, J. Jenkins, 2016, Nature Communications.

Structural dynamics of the ribosome.

Harry F Noller, Andrei Korostelev, H. Noller, 2008, Current opinion in chemical biology.

Thermodynamic consequences of burial of polar and non-polar amino acid residues in the protein interior.

George I Makhatadze, G. Makhatadze, V. V. Loladze, 2002, Journal of molecular biology.

Contribution of surface salt bridges to protein stability: guidelines for protein engineering.

George I Makhatadze, S. T. Thomas, G. Makhatadze, 2003, Journal of molecular biology.

A splice site-sensing conformational switch in U2AF2 is modulated by U2AF1 and its recurrent myelodysplasia-associated mutation

Eliezra Glasser, J. Jenkins, C. Kielkopf, 2019, bioRxiv.

Structural insights into ribosome translocation

C. Ling, D. Ermolenko, 2016, Wiley interdisciplinary reviews. RNA.

Ribosome as a Translocase and Helicase

C. Bao, D. Ermolenko, 2021, Biochemistry (Moscow).

EF-G Activation by Phosphate Analogs.

D. N. Ermolenko, Enea Salsi, Elie Farah, 2016, Journal of molecular biology.

mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding

N. Grigorieff, A. Korostelev, C. Bao, 2020, bioRxiv.

The antibiotic viomycin traps the ribosome in an intermediate state of translocation

Zigurts K. Majumdar, H. Noller, R. Clegg, 2007, Nature Structural &Molecular Biology.

Observation of preQ1-II riboswitch dynamics using single-molecule FRET

J. Wedekind, Chandani Warnasooriya, C. Ling, 2018, RNA biology.

mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances

D. Mathews, Stanislav Bellaousov, Mohammad Kayedkhordeh, 2018, Nature Communications.

Hydrophobic Interactions at the Ccap Position of the C-capping Motif of α-Helices

Rajeev Aurora, George I. Makhatadze, Dmitri N. Ermolenko, 2002 .

Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices.

Rajeev Aurora, George I Makhatadze, Angela M Gronenborn, 2002, Journal of molecular biology.

Observation of intersubunit movement of the ribosome in solution using FRET.

Zigurts K. Majumdar, Harry F Noller, Robert M Clegg, 2007, Journal of molecular biology.

Studies on the Mechanisms of Translocation and Termination

Jianyu Zhu, Taekjip Ha, Dmitri N. Ermolenko, 2011 .

Comparing FRET pairs that report on intersubunit rotation in bacterial ribosomes

C. Bao, D. Ermolenko, Ananya Das, 2023, bioRxiv.

Interplay between Inter-Subunit Rotation of the Ribosome and Binding of Translational GTPases

D. Ermolenko, Nichole Adiletta, Ananya Das, 2023, International journal of molecular sciences.

Specific length and structure rather than high thermodynamic stability enable regulatory mRNA stem-loops to pause translation

D. Mathews, H. Wakabayashi, C. Bao, 2021, bioRxiv.

Planar single-molecule sensors based on hollow-core ARROW waveguides

Dongliang Yin, John P. Barber, Aaron R. Hawkins, 2006, SPIE OPTO.

Studies of Peroxidase Refolding in the Presence of Specific Antibodies

V. V. Sviridov, E. Y. Bezsudnova, A. Zherdev, 2003, Applied Biochemistry and Microbiology.

Heat capacity changes upon burial of polar and nonpolar groups in proteins

G. Makhatadze, V. V. Loladze, G I Makhatadze, 2001, Protein science : a publication of the Protein Society.

Elimination of the C-cap in ubiquitin - structure, dynamics and thermodynamic consequences.

A. Gronenborn, G. Makhatadze, A. Gvritishvili, 2006, Biophysical chemistry.

A connection between the ribosome and two S. pombe tRNA modification mutants subject to rapid tRNA decay

E. Phizicky, Erin Marcus, D. Ermolenko, 2024, PLoS genetics.

Ribosome subunit joining frozen in time.

C. Ling, D. Ermolenko, 2015, Structure.