Kateryna D. Makova

发表

IWTomics: testing high‐resolution sequence‐based ‘Omics' data at multiple locations and scales

Marzia A. Cremona, Alessia Pini, Fabio Cumbo, 2018, Bioinform..

Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis

Marzia A. Cremona, Alessia Pini, Kateryna D. Makova, 2016, PLoS Comput. Biol..

A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms

Kateryna D. Makova, Francesca Chiaromonte, Erika M. Kvikstad, 2007, PLoS Comput. Biol..

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network

Anton Nekrutenko, Kateryna D. Makova, Réka Albert, 2006, BMC Bioinformatics.

Family reunion via error correction: an efficient analysis of duplex sequencing data

Anton Nekrutenko, Kateryna D. Makova, Gundula Povysil, 2018, BMC Bioinformatics.

Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore

Kateryna D. Makova, Dick de Ridder, B. te Lintel Hekkert, 2017 .

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

Kateryna D. Makova, Paul Medvedev, Rayan Chikhi, 2017, bioRxiv.

Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data

Kateryna D. Makova, Monika Cechova, Robert S. Harris, 2018, bioRxiv.

Using Statistics to Shed Light on the Dynamics of the Human Genome: A Review

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2015 .

Non-B DNA affects polymerization speed and error rate in sequencers and living cells

Marzia A. Cremona, Kateryna D. Makova, Francesca Chiaromonte, 2017 .

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Kateryna D. Makova, Paul Medvedev, Kristoffer Sahlin, 2018, Nature Communications.

Strong male-driven evolution of DNA sequences in humans and apes

Kateryna D. Makova, Wen-Hsiung Li, K. Makova, 2002, Nature.

Harnessing cloud-computing for biomedical research with Galaxy Cloud

Anton Nekrutenko, Nate Coraor, Kateryna D. Makova, 2011, Nature biotechnology.

Complete Khoisan and Bantu genomes from southern

Anton Nekrutenko, Kateryna D. Makova, Francesca Chiaromonte, 2010 .

Evolution of X-Degenerate Y Chromosome Genes in Greater Apes: Conservation of Gene Content in Human and Gorilla, But Not Chimpanzee

Kateryna D. Makova, K. Makova, H. Goto, 2009, Journal of Molecular Evolution.

Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions.

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2009, Genome research.

RecoverY: K-mer based read classification for Y-chromosome specific sequencing and assembly

Kateryna D. Makova, Paul Medvedev, Rayan Chikhi, 2017, bioRxiv.

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats

Kateryna D. Makova, Francesca Chiaromonte, K. Makova, 2010, Genome biology and evolution.

Evolution and Survival on Eutherian Sex Chromosomes

Kateryna D. Makova, Melissa A. Wilson, K. Makova, 2009, PLoS genetics.

Towards complete and error-free genome assemblies of all vertebrate species

Sergey Koren, Adam M. Phillippy, Eugene W. Myers, 2020, Nature.

The effects of chromatin organization on variation in mutation rates in the genome

Kateryna D. Makova, Ross C. Hardison, R. Hardison, 2015, Nature Reviews Genetics.

Rescuing Alu: Recovery of New Inserts Shows LINE-1 Preserves Alu Activity through A-Tail Expansion

Kateryna D. Makova, Francesca Chiaromonte, Dale J. Hedges, 2012, PLoS genetics.

Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum

Kateryna D. Makova, O. Branch, X. Su, 2002, Nature.

Streamlined analysis of duplex sequencing data with Du Novo

Anton Nekrutenko, Kateryna D. Makova, Nicholas Stoler, 2016, Genome Biology.

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies

Kateryna D. Makova, Paul Medvedev, Kristoffer Sahlin, 2019, BMC Genomics.

Distinct Mutational Behaviors Differentiate Short Tandem Repeats from Microsatellites in the Human Genome

Kateryna D. Makova, Francesca Chiaromonte, Guruprasad Ananda, 2012, Genome biology and evolution.