Anna R. Panchenko

发表

ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder

Michail Yu. Lobanov, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, 2009, Nucleic Acids Res..

Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases

Benjamin A. Shoemaker, Anna R. Panchenko, A. Panchenko, 2007, PLoS Comput. Biol..

Decoding Molecular Mechanisms of Disease with Medical Biophysics

Anna R. Panchenko, 2020 .

Data sets on human histone interaction networks

Anna R. Panchenko, Yunhui Peng, Yaroslav Markov, 2020, Data in brief.

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

Benjamin A. Shoemaker, Jessica H. Fong, Anna R. Panchenko, 2011, Nucleic Acids Res..

A structure-based method for protein sequence alignment

Alejandro A. Schäffer, Anna R. Panchenko, Stephen H. Bryant, 2005, Bioinform..

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

Benjamin A. Shoemaker, Anna R. Panchenko, A. Panchenko, 2007, PLoS Comput. Biol..

Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows.

Benjamin A. Shoemaker, Anna R. Panchenko, Franco L. Simonetti, 2017, Methods in molecular biology.

State of the art: refinement of multiple sequence alignments

Saikat Chakrabarti, Anna R. Panchenko, Christopher J. Lanczycki, 2010, BMC Bioinform..

CDD: a curated Entrez database of conserved domain alignments

John B. Anderson, Benjamin A. Shoemaker, Anna R. Panchenko, 2003, Nucleic Acids Res..

Mutational signatures and mutable motifs in cancer genomes

Subhajyoti De, Anna R. Panchenko, Eugenia Poliakov, 2017, Briefings Bioinform..

MMDB: Entrez's 3D-structure database

John B. Anderson, Benjamin A. Shoemaker, Anna R. Panchenko, 2002, Nucleic Acids Res..

MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions

Anna R. Panchenko, Minghui Li, Franco L. Simonetti, 2016, Nucleic Acids Res..

Exploring background mutational processes to decipher cancer genetic heterogeneity

Anna R. Panchenko, Minghui Li, Igor B. Rogozin, 2017, Nucleic Acids Res..

Handling Diverse Protein Interaction Data: Integration, Storage and Retrieval

Benjamin A. Shoemaker, Anna R. Panchenko, A. Panchenko, 2008, Protein-protein Interactions and Networks.

HistoneDB 2.0: a histone database with variants—an integrated resource to explore histones and their variants

Anna R. Panchenko, David Landsman, Leonardo Mariño-Ramírez, 2016, Database J. Biol. Databases Curation.

Proceedings of the 4th Brazilian Symposium on Bioinformatics: Advances in Bioinformatics and Computational Biology

Anna R. Panchenko, Teresa M. Przytycka, Katia S. Guimarães, 2009 .

MMDB: 3D structures and macromolecular interactions

Yanli Wang, Jie Chen, Jessica H. Fong, 2011, Nucleic Acids Res..

Database resources of the National Center for Biotechnology Information

Zhiyong Lu, Evan Bolton, Yanli Wang, 2010, Nucleic Acids Res..

Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis

Michail Yu. Lobanov, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, 2009, PLoS Comput. Biol..

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

Benjamin A. Shoemaker, Anna R. Panchenko, Stephen H. Bryant, 2002, Nucleic Acids Res..

Database resources of the National Center for Biotechnology Information

Zhiyong Lu, Evan Bolton, Ian M. Fingerman, 2020, Nucleic Acids Res..

Database resources of the National Center for Biotechnology Information

Evan Bolton, Ian M. Fingerman, Gregory D. Schuler, 2012, Nucleic Acids Res..

Ensemble approach to predict specificity determinants: benchmarking and validation

Anna R. Panchenko, Saikat Chakrabarti, A. Panchenko, 2009, BMC Bioinformatics.

SPEER-SERVER: a web server for prediction of protein specificity determining sites

Anna R. Panchenko, Christopher J. Lanczycki, Abhijit Chakraborty, 2012, Nucleic Acids Res..

Knowledge-based annotation of small molecule binding sites in proteins

Benjamin A. Shoemaker, Anna R. Panchenko, Thomas Madej, 2010, BMC Bioinformatics.

Inferred Biomolecular Interaction Server—a web server to analyze and predict protein interacting partners and binding sites

Benjamin A. Shoemaker, Jessica H. Fong, Anna R. Panchenko, 2009, Nucleic Acids Res..

Erratum to: State of the art: refinement of multiple sequence alignments

Anna R. Panchenko, Christopher J. Lanczycki, Stephen H. Bryant, 2006, BMC Bioinformatics.

Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers

Subhajyoti De, Anna R. Panchenko, Igor B. Rogozin, 2016, Scientific Reports.

Homology Inference of Protein-Protein Interactions via Conserved Binding Sites

Anna R. Panchenko, Thomas Madej, Stephen H. Bryant, 2012, PloS one.

Mutations in DNA-Binding Loop of NFAT5 Transcription Factor Produce Unique Outcomes on Protein–DNA Binding and Dynamics

Benjamin A. Shoemaker, Anna R. Panchenko, Maurice B. Burg, 2013, The journal of physical chemistry. B.

Refining multiple sequence alignments with conserved core regions

Anna R. Panchenko, Christopher J. Lanczycki, Stephen H. Bryant, 2006, Nucleic acids research.

MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

Ning Zhang, Anna R. Panchenko, Alexander Goncearenco, 2020, iScience.

Structural and Functional Roles of Coevolved Sites in Proteins

Anna R. Panchenko, Saikat Chakrabarti, A. Panchenko, 2010, PloS one.

Computational Approaches to Prioritize Cancer Driver Missense Mutations

Anna R. Panchenko, Alexander Goncearenco, Minghui Li, 2018, International journal of molecular sciences.