Robyn Baker

发表

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

J. Banfield, Alexander D. Johnson, R. Hettich, 2020, bioRxiv.

Shifts in microbial transcription patterns prior to onset of Necrotizing enterocolitis may indicate low oxygen levels in the gut

J. Banfield, Tali Raveh-Sadka, C. Brown, 2018, bioRxiv.

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

Brian C. Thomas, Christopher S. Miller, Jillian F Banfield, 2014, Microbiome.

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development

Brian C. Thomas, Itai Sharon, Cindy J. Castelle, 2015, eLife.

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Brian C. Thomas, J. Banfield, B. Firek, 2018, Microbiome.

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles

Brian C. Thomas, Jillian F. Banfield, Robert L. Hettich, 2017, mBio.

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

J. Banfield, B. Firek, M. Morowitz, 2019, Microbiome.

Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes

J. Banfield, B. Firek, Robyn Baker, 2018, bioRxiv.

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Brian C. Thomas, D. Burstein, J. Banfield, 2017, Genome Research.

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition

J. Banfield, B. Firek, M. Morowitz, 2021, Cell reports. Medicine.

Infant gut strain persistence is associated with maternal origin, phylogeny, and functional potential including surface adhesion and iron acquisition

J. Banfield, B. Firek, M. Morowitz, 2021, bioRxiv.

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut

J. Banfield, Tali Raveh-Sadka, C. Brown, 2020, PloS one.

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria

Yun S. Song, J. Banfield, Nicholas Bhattacharya, 2019, Science Advances.

Mucosa-Associated Bacterial Diversity in Necrotizing Enterocolitis

B. Firek, M. Morowitz, D. Hackam, 2014, PloS one.

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

J. Banfield, B. Firek, M. Morowitz, 2018, bioRxiv.

Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants

Brian C. Thomas, Itai Sharon, J. Banfield, 2016, The ISME Journal.

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

J. Banfield, B. Firek, M. Morowitz, 2017, Nature Communications.

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

Jillian F Banfield, Brian C Thomas, J. Banfield, 2017, Nature Communications.

Red blood cell transfusion in premature infants leads to worse necrotizing enterocolitis outcomes.

M. Good, K. Mollen, Frances C. Okolo, 2017, The Journal of surgical research.

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants

B. Firek, M. Morowitz, Benjamin R Macadangdang, 2019, Nature Medicine.

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants

B. Firek, M. Morowitz, Benjamin R Macadangdang, 2019, Nature Medicine.

Physiologically Based Pharmacokinetic Modeling of Meropenem in Preterm and Term Infants

B. Poindexter, M. Walsh, E. Eichenwald, 2021, Clinical Pharmacokinetics.

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms

J. Banfield, B. Firek, M. Morowitz, 2019, Microbiome.

Randomized Clinical Trial of Standard- Versus High-Calorie Formula for Methadone-Exposed Infants: A Feasibility Study.

B. Hanusa, B. Cohlan, D. Bogen, 2018, Hospital pediatrics.

Concentrations and Sources of Airborne Particles in a Neonatal Intensive Care Unit

William W. Nazaroff, Jillian F. Banfield, Seema Bhangar, 2016, PloS one.

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

D. Burstein, J. Banfield, C. Brown, 2017, Genome research.

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Brian C. Thomas, J. Banfield, B. Firek, 2018, Microbiome.