Robert L. Moritz

发表

Author response: An open-source computational and data resource to analyze digital maps of immunopeptidomes

Sangtae Kim, Eric W. Deutsch, Miguel Marcilla, 2015 .

ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry

Jingchun Chen, Eric W. Deutsch, Ruedi Aebersold, 2011, BMC Bioinformatics.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Eric W. Deutsch, Nuno Bandeira, Lydie Lane, 2019, bioRxiv.

The SysteMHC Atlas project

Roman A. Zubarev, Emanuel Schmid, Witold Wolski, 2017, Nucleic Acids Res..

CHAPTER 13:Trans-Proteomic Pipeline for the Identification, Validation, and Quantification of Proteins

Eric W. Deutsch, Luis Mendoza, Robert L. Moritz, 2020 .

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

Yi Shi, Karl Mechtler, Lan Huang, 2018 .

jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

Lennart Martens, Kenny Helsens, Robert L. Moritz, 2011, Journal of proteome research.

A repository of assays to quantify 10,000 human proteins by SWATH-MS

Eric W. Deutsch, Ruedi Aebersold, Yansheng Liu, 2014, Scientific Data.

The 2012 PRG Study: Assessing Longitudinal Variability in Routine Peptide LC-MS/MS Analysis

David L. Tabb, Cory Bystrom, Keiryn L. Bennett, 2012 .

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

Hui Zhang, Brett Larsen, Anne-Claude Gingras, 2016 .

PRG-2011: Defining the Interaction Between Users and Suppliers of Proteomics Services/Facilities

Robert L. Moritz, Robert E. Settlage, Tracy M. Andacht, 2011 .

PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline

Eric W. Deutsch, Luis Mendoza, Mukul Kumar Midha, 2019, bioRxiv.

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

Juan Antonio Vizcaíno, Henning Hermjakob, Eric W. Deutsch, 2016, Nucleic Acids Res..

Combining Results of Multiple Search Engines in Proteomics*

Eric W. Deutsch, Alexey I. Nesvizhskii, Robert L. Moritz, 2013, Molecular & Cellular Proteomics.

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework

Henning Hermjakob, Eric W. Deutsch, John Boyle, 2012, BMC Bioinformatics.

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists*

Lennart Martens, Fredrik Levander, Matthew Chambers, 2011, Molecular & Cellular Proteomics.

SWATHTM Acquisition を用いたシステムバイオロジーによる結核菌のプロテオーム解析法

Robert L. Moritz, Christie L. Hunter, 達夫村上, 2014 .

iProphet: Improved statistical validation of peptide and protein identifications in shotgun proteomics

Henry H N Lam, Luis Mendoza, Ruedi Aebersold, 2011 .

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

Eric W. Deutsch, Ruedi Aebersold, Bernd Wollscheid, 2013, Nature.

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses

Jeroen Krijgsveld, Michael J. MacCoss, Kathryn S. Lilley, 2011, Proteomics.

Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein Signature*

Richard J. Simpson, Robert L. Moritz, Suresh Mathivanan, 2009, Molecular & Cellular Proteomics.

Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Project.

Eric W. Deutsch, Nuno Bandeira, Ruedi Aebersold, 2020, Journal of proteome research.

An assessment of current bioinformatic solutions for analyzing LC‐MS data acquired by selected reaction monitoring technology

Robert L. Moritz, Ulrike Kusebauch, Mi-Youn K. Brusniak, 2012, Proteomics.

Proteomics Profiling of Madin-Darby Canine Kidney Plasma Membranes Reveals Wnt-5a Involvement during Oncogenic H-Ras/TGF-β-mediated Epithelial-Mesenchymal Transition*

Hong-Jian Zhu, Richard J. Simpson, Robert L. Moritz, 2010, Molecular & Cellular Proteomics.

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Nitin S. Baliga, Paul Wilmes, Patrick May, 2014, Nature Communications.

Combining Results of Multiple Search Engines

Alexey I. Nesvizhskii, Robert L. Moritz, David Shteynberg, 2013 .

The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses*

David L. Tabb, Keiryn L. Bennett, Robert L. Moritz, 2015, Molecular & Cellular Proteomics.

PASSEL: The PeptideAtlas SRMexperiment library

Eric W. Deutsch, Luis Mendoza, Nathalie Selevsek, 2012, Proteomics.

Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome

Chris Sander, Eric W. Deutsch, Emek Demir, 2016, Cell.