R. Lessells

发表

Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage

S. Madhi, A. Sigal, T. de Oliveira, 2022, Nature Communications.

Assessing the clinical severity of the Omicron variant in the Western Cape Province, South Africa, using the diagnostic PCR proxy marker of RdRp target delay to distinguish between Omicron and Delta infections – a survival analysis

R. Wilkinson, C. Williamson, W. Preiser, 2022, International Journal of Infectious Diseases.

Reduced efficacy of HIV-1 integrase inhibitors in patients with drug resistance mutations in reverse transcriptase

M. Siedner, T. de Oliveira, Ravindra K. Gupta, 2020, Nature Communications.

Outcomes of laboratory-confirmed SARS-CoV-2 infection during resurgence driven by Omicron lineages BA.4 and BA.5 compared with previous waves in the Western Cape Province, South Africa

M. Mendelson, R. Wilkinson, H. Mahomed, 2022, International Journal of Infectious Diseases.

Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–2018

T. de Oliveira, J. Giandhari, E. Gudo, 2022, Viruses.

Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus

M. Kraemer, O. Pybus, A. Rambaut, 2022, PLoS biology.

Omicron sub-lineages BA.4/BA.5 escape BA.1 infection elicited neutralizing immunity

A. Sigal, W. Hanekom, G. Lustig, 2022, medRxiv.

Beta infection combined with Pfizer BNT162b2 vaccination leads to broadened neutralizing immunity against Omicron

A. Sigal, W. Hanekom, G. Lustig, 2022, medRxiv.

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

R. Shafer, P. Lemey, A. Nekrutenko, 2022, Molecular biology and evolution.

SARS-CoV-2 evolves increased infection elicited cell death and fusion in an immunosuppressed individual

A. Sigal, T. de Oliveira, G. Lustig, 2022, medRxiv.

Immunogenicity of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Ad26.CoV2.S Vaccination in People Living With Human Immunodeficiency Virus (HIV)

T. Ndung’u, A. Sigal, P. Goulder, 2021, Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America.

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Ira W. Deveson, Nikki E. Freed, Nuno R. Faria, 2021, Wellcome open research.

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

R. Shafer, P. Lemey, A. Nekrutenko, 2022, bioRxiv.

Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls

Shakuntala Baichoo, Richard Lessells, James Emmanuel San, 2020, Frontiers in Microbiology.

Global Expansion of SARS-CoV-2 Variants of Concern: Dispersal Patterns and Influence of Air Travel

Nuno R. Faria, O. Pybus, M. Giovanetti, 2022, medRxiv.

Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique

Joicymara S. Xavier, S. Niemann, T. de Oliveira, 2023, PLOS global public health.

Dolutegravir for first-line antiretroviral therapy in low-income and middle-income countries: uncertainties and opportunities for implementation and research.

P. Drain, T. de Oliveira, N. Garrett, 2018, The lancet. HIV.

Outcomes of laboratory‐confirmed SARS‐CoV‐2 infection in the Omicron‐driven fourth wave compared with previous waves in the Western Cape Province, South Africa

M. Mendelson, H. Mahomed, R. Kassanjee, 2022, medRxiv.

Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022

A. Desta, T. de Oliveira, J. Giandhari, 2023, medRxiv.

Persistent SARS-CoV-2 infection with accumulation of mutations in a patient with poorly controlled HIV infection

T. de Oliveira, W. Preiser, E. Wilkinson, 2022, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

High Resolution analysis of Transmission Dynamics of Sars-Cov-2 in Two Major Hospital Outbreaks in South Africa Leveraging Intrahost Diversity

T. de Oliveira, A. Kanzi, J. Giandhari, 2020, medRxiv.

Antiretroviral therapy adherence patterns, virological suppression, and emergence of drug resistance: A nested case–control study from Uganda and South Africa

D. Rabideau, M. Siedner, T. de Oliveira, 2022, Antiviral therapy.

Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch

Nikki E. Freed, Nuno R. Faria, M. Koopmans, 2021, Wellcome open research.

Outcomes of laboratory-confirmed SARS-CoV-2 infection during resurgence driven by Omicron lineages BA.4 and BA.5 compared with previous waves in the Western Cape Province, South Africa

M. Mendelson, R. Wilkinson, H. Mahomed, 2022, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

Dispersal Patterns and Influence of Air Travel During the Global Expansion of SARS-CoV-2 Variants of Concern

Joicymara S. Xavier, Nuno R. Faria, I. Bogoch, 2023, Cell.

The continuous evolution of SARS-CoV-2 in South Africa: a new lineage with rapid accumulation of mutations of concern and global detection

S. Madhi, A. Sigal, T. de Oliveira, 2021, medRxiv.

Dispersal Patterns and Influence of Air Travel During the Global Expansion of SARS-CoV-2 Variants of Concern

Joicymara S. Xavier, Nuno R. Faria, I. Bogoch, 2023, Cell.

HIV status alters disease severity and immune cell responses in β variant SARS-CoV-2 infection wave

T. Ndung’u, A. Sigal, A. Leslie, 2021 .