Maria Pires Pacheco

发表

The FASTCORE Family: For the Fast Reconstruction of Compact Context-Specific Metabolic Networks Models.

Thomas Sauter, Maria Pires Pacheco, T. Sauter, 2018, Methods in molecular biology.

Towards the Integration of Metabolic Network Modelling and Machine Learning for the Routine Analysis of High-Throughput Patient Data

Thomas Sauter, Maria Pires Pacheco, Tamara Bintener, 2019, Automated Reasoning for Systems Biology and Medicine.

Fast Reconstruction of Compact Context-Specific Metabolic Network Models

Nikos Vlassis, Thomas Sauter, Maria Pires Pacheco, 2013, PLoS Comput. Biol..

Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond

Thomas Sauter, Maria Pires Pacheco, Thomas Pfau, 2015, Briefings Bioinform..

Fast reconstruction of compact context-specific metabolic networks via integration of microarray data

Thomas Sauter, Maria Pires Pacheco, T. Sauter, 2014, 1407.6534.

Integrated In Vitro and In Silico Modeling Delineates the Molecular Effects of a Synbiotic Regimen on Colorectal-Cancer-Derived Cells.

Maria Pires Pacheco, P. Wilmes, I. Thiele, 2019, Cell Reports.

Resource Integrated In Vitro and In S ilico Modeling Delineates the Molecular Effects of a Synbiotic Regimen on Colorectal-Cancer-Derived Cells Graphical

Maria Pires Pacheco, P. Wilmes, I. Thiele, 2019 .

Acetic Acid and Pentane Treatment by a Biofiltration System Based on Organic Beds Under Transient Conditions

Maria Pires Pacheco, J. Klemeš, S. Pierucci, 2019 .

Towards the routine use of in silico screenings for drug discovery using metabolic modelling

Maria Pires Pacheco, T. Sauter, Tamara Bintener, 2020, Biochemical Society transactions.

Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network

Thomas Sauter, Merja Heinäniemi, Maria Pires Pacheco, 2015, BMC Genomics.

The neural stem cell fate determinant TRIM32 regulates complex behavioral traits

Maria Pires Pacheco, T. Sauter, J. Schwamborn, 2015, Front. Cell. Neurosci..

The Power of LC-MS Based Multiomics: Exploring Adipogenic Differentiation of Human Mesenchymal Stem/Stromal Cells

Maria Pires Pacheco, G. Koellensperger, T. Naegele, 2019, Molecules.

The Power of LC-MS Based Multiomics: Exploring Adipogenic Differentiation of Human Mesenchymal Stem/Stromal Cells

Maria Pires Pacheco, G. Koellensperger, T. Naegele, 2019, Molecules.

Loss of Ambra1 promotes melanoma growth and invasion

Colin J. Daniel, Maria Pires Pacheco, R. Sears, 2021, Nature Communications.

Identifying and targeting cancer-specific metabolism with network-based drug target prediction

Maria Pires Pacheco, T. Sauter, S. Haan, 2019, EBioMedicine.

Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases

Maria Pires Pacheco, T. Sauter, S. Niclou, 2022, Cells.

Integrated In Vitro and In Silico Modeling Delineates the Molecular Effects of a Synbiotic Regimen on Colorectal-Cancer-Derived Cells.

Maria Pires Pacheco, P. Wilmes, I. Thiele, 2019, Cell reports.

Integration of external biomass reactions into existing metabolic models

Maria Pires Pacheco, T. Sauter, María Moscardó García, 2022, bioRxiv.

scFASTCORMICS: A Contextualization Algorithm to Reconstruct Metabolic Multi-Cell Population Models from Single-Cell RNAseq Data

Maria Pires Pacheco, T. Sauter, María Moscardó García, 2022, Metabolites.

Project-based learning course on metabolic network modelling in computational systems biology

Maria Pires Pacheco, T. Sauter, Thomas Pfau, 2022, PLoS Comput. Biol..

A dynamic multi-tissue model to study human metabolism

Maria Pires Pacheco, T. Sauter, Thomas Pfau, 2021, NPJ systems biology and applications.

The gut microbial metabolite formate exacerbates colorectal cancer progression

Maria Pires Pacheco, P. Wilmes, T. Sauter, 2022, Nature Metabolism.

Bruceine D Identified as a Drug Candidate against Breast Cancer by a Novel Drug Selection Pipeline and Cell Viability Assay

Maria Pires Pacheco, T. Sauter, D. Abankwa, 2022, Pharmaceuticals.

Ambra1 modulates the tumor immune microenvironment and response to PD-1 blockade in melanoma

Maria Pires Pacheco, T. Sauter, P. Guldberg, 2023, Journal for ImmunoTherapy of Cancer.

DCcov: Repositioning of drugs and drug combinations for SARS-CoV-2 infected lung through constraint-based modeling

Maria Pires Pacheco, T. Sauter, Ali Kishk, 2021, iScience.

Importance of the biomass formulation for cancer metabolic modeling and drug prediction

Maria Pires Pacheco, T. Sauter, Tamara Bintener, 2021, iScience.

Benchmarking Procedures for High-Throughput Context Specific Reconstruction Algorithms

Thomas Sauter, Maria Pires Pacheco, Maria P. Pacheco, 2016, Front. Physiol..

Metabolic modelling-based in silico drug target prediction identifies six novel repurposable drugs for melanoma

Maria Pires Pacheco, T. Sauter, Tamara Bintener, 2023, Cell death & disease.

AMBRA1 levels predict resistance to MAPK inhibitors in melanoma.

Maria Pires Pacheco, C. Bertolotto, R. Ballotti, 2024, Proceedings of the National Academy of Sciences of the United States of America.

Epigenetic control of metabolic identity across cell types

Maria Pires Pacheco, Dennis Hecker, Lasse Sinkkonen, 2024, bioRxiv.