Jens C. Otte

发表

EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

Andreas Bartschat, Ralf Mikut, Johannes Stegmaier, 2018, PLoS Comput. Biol..

Generating semi-synthetic validation benchmarks for embryomics

Ralf Mikut, Johannes Stegmaier, Peter Sanders, 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

LAMBDA -- The LSDF Execution Framework for Data Intensive Applications

Achim Streit, Thomas Jejkal, Rainer Stotzka, 2012, 2012 20th Euromicro International Conference on Parallel, Distributed and Network-based Processing.

A new framework for interactive knowledge discovery in large-scale trajectory data of zebrafish embryos

Ralf Mikut, Johannes Stegmaier, Manuel Traub, 2017 .

Data management and analysis at the Large Scale Data Facility

Achim Streit, Bernhard Neumair, Thomas Jejkal, 2011, 2011 Sixth International Conference on Digital Information Management.

Data-intensive analysis for scientific experiments at the Large Scale Data Facility

Achim Streit, Bernhard Neumair, Thomas Jejkal, 2011, 2011 IEEE Symposium on Large Data Analysis and Visualization.

The fish embryo test (FET): origin, applications, and future

Jens C. Otte, T. Braunbeck, E. Lammer, 2015, Environmental Science and Pollution Research.

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Jens C. Otte, R. Mikut, G. Nienhaus, 2014, PloS one.

An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution

Ralf Mikut, Johannes Stegmaier, Rainer Stotzka, 2015, Scientific Reports.

realTox: Real-time imaging of toxicant impact in whole organisms at single cell resolution

Ralf Mikut, Johannes Stegmaier, Rainer Stotzka, 2013 .

A bioassay approach to determine the dioxin-like activity in sediment extracts from the Danube River: ethoxyresorufin-O-deethylase induction in gill filaments and liver of three-spined sticklebacks (Gasterosteus aculeatus L.).

Jens C. Otte, B. Brunström, S. Keiter, 2008, Environment international.

Fold-change threshold screening: a robust algorithm to unmask hidden gene expression patterns in noisy aggregated transcriptome data

Jens C. Otte, U. Strähle, S. Keiter, 2015, Environmental Science and Pollution Research.

DanTox—a novel joint research project using zebrafish (Danio rerio) to identify specific toxicity and molecular modes of action of sediment-bound pollutants

Jens C. Otte, G. Reifferscheid, T. Braunbeck, 2010 .

Impacts of Different Exposure Scenarios on Transcript Abundances in Danio rerio Embryos when Investigating the Toxicological Burden of Riverine Sediments

Jens C. Otte, T. Braunbeck, U. Strähle, 2014, PloS one.

Contribution of Priority PAHs and POPs to Ah Receptor-Mediated Activities in Sediment Samples from the River Elbe Estuary, Germany

Jens C. Otte, J. Giesy, M. Hecker, 2013, PloS one.

Toxicity, dioxin-like activities, and endocrine effects of DDT metabolites—DDA, DDMU, DDMS, and DDCN

Jens C. Otte, T. Braunbeck, H. Hollert, 2012, Environmental Science and Pollution Research.

Moving persistence assessments into the 21st century: A role for weight‐of‐evidence and overall persistence

Jens C. Otte, D. Lyon, John W. Davis, 2021, Integrated environmental assessment and management.

Fishing for contaminants: identification of three mechanism specific transcriptome signatures using Danio rerio embryos

Jens C. Otte, M. Hecker, Song Tang, 2018, Environmental Science and Pollution Research.

Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves

Jens C. Otte, R. Mikut, G. Nienhaus, 2020, PLoS genetics.

A combined DNA-microarray and mechanism-specific toxicity approach with zebrafish embryos to investigate the pollution of river sediments.

Jens C. Otte, W. Manz, G. Reifferscheid, 2012, Reproductive toxicology.

Induction of ethoxyresorufin- O- deethylase (EROD) in the three- spined stickleback (Gasterosteus aculeatus L.) exposed to extracts of sediments from the Danube River

Jens C. Otte, 2006 .

Relative differences in aryl hydrocarbon receptor‐mediated response for 18 polybrominated and mixed halogenated dibenzo‐P‐dioxins and ‐furans in cell lines from four different species

Henner Hollert, Jens C. Otte, Bert van Bavel, 2007, Environmental toxicology and chemistry.

Intrinsic Xenobiotic Metabolizing Enzyme Activities in Early Life Stages of Zebrafish (Danio rerio)

Jens C. Otte, E. Fabian, B. van Ravenzwaay, 2017, Toxicological sciences : an official journal of the Society of Toxicology.

Spatio-temporal development of CYP1 activity in early life-stages of zebrafish (Danio rerio).

Jens C. Otte, T. Braunbeck, H. Hollert, 2010, Aquatic toxicology.

Microscope with at least one illumination beam in the form of a lens

Jens C. Otte, G. Nienhaus, U. Strähle, 2012 .

Heterogeneity in biological assemblages and exposure in chemical risk assessment: Exploring capabilities and challenges in methodology with two landlandscape-scale case studies.

Jens C. Otte, S. Marshall, P. Thorbek, 2022, Ecotoxicology and environmental safety.

Differences in Ah receptor mediated response for eighteen polybrominated and mixed halogenated dibenzo-p-dioxins and -furans in cell lines from four different species

Jens C. Otte, H. Hollert, U. Kammann, 2005 .