Thomas B Woolf

Computing ensembles of transitions with molecular dynamics simulations.

Juan R Perilla, Thomas B Woolf, T. Woolf, 2015, Methods in molecular biology.

Computing ensembles of transitions from stable states: Dynamic importance sampling

Juan R Perilla, Thomas B Woolf, Oliver Beckstein, 2011, J. Comput. Chem..

Molecular dynamics simulation of dark-adapted rhodopsin in an explicit membrane bilayer: coupling between local retinal and larger scale conformational change.

Thomas B Woolf, Lucy R Forrest, Paul S Crozier, 2003, Journal of molecular biology.

Discrimination of native loop conformations in membrane proteins: Decoy library design and evaluation of effective energy scoring functions

Thomas B Woolf, Lucy R Forrest, L. Forrest, 2003, Proteins.

Using overlap and funnel sampling to obtain accurate free energies from nonequilibrium work measurements.

Thomas B Woolf, Di Wu, David A Kofke, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Atomistic simulations of biologically realistic transmembrane potential gradients.

Thomas B Woolf, Paul S Crozier, P. Crozier, 2004, The Journal of chemical physics.

Multiscale modeling of double-helical DNA and RNA: a unification through Lie groups.

Thomas B Woolf, Gregory S Chirikjian, Kevin C. Wolfe, 2012, The journal of physical chemistry. B.

Insights into the molecular mechanism of membrane fusion from simulation: evidence for the association of splayed tails.

Thomas B Woolf, Jan H Hoh, J. Hoh, 2003, Physical review letters.

Insights into protein structure and function from disorder–complexity space

Thomas B Woolf, Jan H Hoh, J. Hoh, 2006, Proteins.

Theory of a systematic computational error in free energy differences.

Thomas B Woolf, Daniel M Zuckerman, T. Woolf, 2002, Physical review letters.