Miguel A. Andrade-Navarro

发表

Evolving research trends in bioinformatics

Miguel A. Andrade-Navarro, Carolina Perez-Iratxeta, Jonathan D. Wren, 2006, Briefings Bioinform..

Computational space reduction and parallelization of a new clustering approach for large groups of sequences

Miguel A. Andrade-Navarro, Alfonso Valencia, Emilio L. Zapata, 1998, Bioinform..

Classification of protein families and detection of the determinant residues with an improved self-organizing map

Miguel A. Andrade-Navarro, Chris Sander, Alfonso Valencia, 1997, Biological Cybernetics.

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships

Miguel A. Andrade-Navarro, Georgios A. Pavlopoulos, Adriano Barbosa-Silva, 2010, BMC Bioinformatics.

uORFdb—a comprehensive literature database on eukaryotic uORF biology

Miguel A. Andrade-Navarro, Adriano Barbosa-Silva, Klaus Wethmar, 2013, Nucleic Acids Res..

Structural study of the development of ocularity domains using a neural network model

Miguel A. Andrade-Navarro, Federico Morán, 2004, Biological Cybernetics.

Using cited references to improve the retrieval of related biomedical documents

Ignacio Rojas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine, 2013, BMC Bioinformatics.

CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data

Miguel A. Andrade-Navarro, Sander Bollen, Mathias Leddin, 2014, Bioinform..

RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures

Silvio C. E. Tosatto, Miguel A. Andrade-Navarro, Damiano Piovesan, 2017, Nucleic Acids Res..

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries

Miguel A. Andrade-Navarro, Adriano Barbosa-Silva, J. Miguel Ortega, 2011, BMC Bioinformatics.

Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions

Miguel A. Andrade-Navarro, Alfonso Valencia, Christian Blaschke, 1999, ISMB.

Alkemio: association of chemicals with biomedical topics by text and data mining

Miguel A. Andrade-Navarro, Jean-Fred Fontaine, José A. Gijón-Correas, 2014, Nucleic Acids Res..

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases

Yukiko Matsuoka, Hiroaki Kitano, Martin H. Schaefer, 2011, Bioinform..

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function

Miguel A. Andrade-Navarro, Chris Sander, Alfonso Valencia, 1997, Comput. Appl. Biosci..

Evaluation of annotation strategies using an entire genome sequence

Miguel A. Andrade-Navarro, Alfonso Valencia, Anton J. Enright, 2003, Bioinform..

Machine Learning in Quality Assessment of Early Stage Next-Generation Sequencing Data

Miguel A. Andrade-Navarro, Steffen Albrecht, Jean-Fred Fontaine, 2019, bioRxiv.

Gene annotation from scientific literature using mappings between keyword systems

Miguel A. Andrade-Navarro, Peer Bork, Carolina Perez-Iratxeta, 2004, Bioinform..

A novel approach for protein subcellular location prediction using amino acid exposure

Miguel A. Andrade-Navarro, Arvind Mer, A. Mer, 2013, BMC Bioinformatics.

Towards Identifying Drug Side Effects from Social Media Using Active Learning andCrowd Sourcing

Miguel A. Andrade-Navarro, Sophie Burkhardt, Stefan Kramer, 2019, PSB.

Assessment of computational methods for the analysis of single-cell ATAC-seq data

Miguel A. Andrade-Navarro, Luca Pinello, Caleb A. Lareau, 2019, Genome Biology.

CABRA: Cluster and Annotate Blast Results Algorithm

Miguel A. Andrade-Navarro, Pablo Mier, 2016, BMC Research Notes.

Toward completion of the Earth’s proteome: an update a decade later

Miguel A. Andrade-Navarro, Pablo Mier, Pablo Mier, 2019, Briefings Bioinform..

The latent geometry of the human protein interaction network

Miguel A. Andrade-Navarro, Gregorio Alanis-Lobato, Pablo Mier, 2017 .

Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families

Miguel A. Andrade-Navarro, Alfonso Valencia, A. Valencia, 1998, Bioinform..

Peer2ref: a peer-reviewer finding web tool that uses author disambiguation

Miguel A. Andrade-Navarro, Carolina Perez-Iratxeta, Gareth A. Palidwor, 2011, BioData Mining.

Simulation of plasticity in the adult visual cortex

Miguel A. Andrade-Navarro, Federico Morán, Enrique M. Muro, 2001, Biological Cybernetics.

Keynote lectures

Yuan-Ting Zhang, Konstantina S. Nikita, Miguel A. Andrade-Navarro, 2012, BIBE.

Information extraction from full text scientific articles: Where are the keywords?

Miguel A. Andrade-Navarro, Peer Bork, Carolina Perez-Iratxeta, 2003, BMC Bioinformatics.

Automatic Annotation for Biological Sequences by Etraction of Keywords from MEDLINE Abstracts: Development of a Prototype System

Miguel A. Andrade-Navarro, Alfonso Valencia, A. Valencia, 1997, ISMB.

Génie: literature-based gene prioritization at multi genomic scale

Miguel A. Andrade-Navarro, Adriano Barbosa-Silva, Jean-Fred Fontaine, 2011, Nucleic Acids Res..

BiasViz: visualization of amino acid biased regions in protein alignments

Miguel A. Andrade-Navarro, Matthew R. Huska, Henrik Buschmann, 2007, Bioinform..

Interpretable machine learning models for single-cell ChIP-seq imputation

Miguel A. Andrade-Navarro, Jean-Fred Fontaine, Steffen Albrecht, 2019, bioRxiv.

Evolving research trends in

Miguel A. Andrade-Navarro, Jonathan D. Wren, 2006 .

PDBpaint, a visualization webservice to tag protein structures with sequence annotations

Miguel A. Andrade-Navarro, David Fournier, D. Fournier, 2011, Bioinform..

Amplification of the Gene Ontology annotation of Affymetrix probe sets

Miguel A. Andrade-Navarro, Carolina Perez-Iratxeta, Enrique M. Muro, 2005, BMC Bioinformatics.

Taxonomic colouring of phylogenetic trees of protein sequences

Miguel A. Andrade-Navarro, Emmanuel G. Reynaud, Gareth A. Palidwor, 2005, BMC Bioinformatics.

Automated genome sequence analysis and annotation

Miguel A. Andrade-Navarro, Alfonso Valencia, Christos A. Ouzounis, 1999, Bioinform..

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions

Yukiko Matsuoka, Hiroaki Kitano, Martin H. Schaefer, 2013, PLoS Comput. Biol..

FastaHerder2: Four Ways to Research Protein Function and Evolution with Clustering and Clustered Databases

Miguel A. Andrade-Navarro, Pablo Mier, Pablo Mier, 2016, J. Comput. Biol..

Distance Distribution between Complex Network Nodes in Hyperbolic Space

Miguel A. Andrade-Navarro, Gregorio Alanis-Lobato, Gregorio Alanis-Lobato, 2016, Complex Syst..

Inconsistencies over time in 5% of NetAffx probe-to-gene annotations

Miguel A. Andrade-Navarro, Carolina Perez-Iratxeta, C. Perez-Iratxeta, 2005, BMC Bioinformatics.

MedlineRanker: flexible ranking of biomedical literature

Martin H. Schaefer, Miguel A. Andrade-Navarro, Adriano Barbosa-Silva, 2009, Nucleic Acids Res..

Quality control guidelines and machine learning predictions for next generation sequencing data

Miguel A. Andrade-Navarro, Jean-Fred Fontaine, Steffen Albrecht, 2020 .

Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin

Erich E. Wanker, Miguel A. Andrade-Navarro, Ulrich Stelzl, 2009, PLoS Comput. Biol..

NAIL-Network Analysis Interface for Linking HMMER results

Miguel A. Andrade-Navarro, Yan P. Yuan, Peer Bork, 2000, Bioinform..

HIPPIE v2.0: enhancing meaningfulness and reliability of protein–protein interaction networks

Martin H. Schaefer, Miguel A. Andrade-Navarro, Gregorio Alanis-Lobato, 2016, Nucleic Acids Res..

Update on XplorMed: a web server for exploring scientific literature

Miguel A. Andrade-Navarro, Peer Bork, Carolina Perez-Iratxeta, 2003, Nucleic Acids Res..